Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52744 | Canola | nucleus | 70.44 | 72.96 |
| Bra007019.1-P | Field mustard | nucleus | 69.46 | 69.8 |
| CDY07572 | Canola | nucleus | 67.49 | 69.54 |
| CDX78195 | Canola | nucleus | 69.46 | 68.78 |
| Bra003152.1-P | Field mustard | nucleus | 66.5 | 67.84 |
| CDX73534 | Canola | nucleus | 68.47 | 65.57 |
| AT2G37480.1 | Thale cress | nucleus | 57.64 | 60.31 |
Protein Annotations
| MapMan:35.2 | EntrezGene:824534 | UniProt:A0A178VGX4 | ProteinID:AEE79124.1 | ProteinID:AEE79125.1 | EMBL:AF386972 |
| ArrayExpress:AT3G53670 | EnsemblPlantsGene:AT3G53670 | RefSeq:AT3G53670 | TAIR:AT3G53670 | RefSeq:AT3G53670-TAIR-G | EnsemblPlants:AT3G53670.1 |
| TAIR:AT3G53670.1 | EMBL:AY072538 | Unigene:At.21122 | ProteinID:CAB67674.1 | GO:GO:0003674 | GO:GO:0008150 |
| RefSeq:NP_001190081.1 | RefSeq:NP_190935.1 | ProteinID:OAP04791.1 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | UniProt:Q9LFF4 |
| UniParc:UPI00000A6844 | SEG:seg | : | : | : | : |
Description
Uncharacterized protein At3g53670; F4P12.370 [Source:UniProtKB/TrEMBL;Acc:Q9LFF4]
Coordinates
chr3:+:19890421..19892404
Molecular Weight (calculated)
21935.4 Da
IEP (calculated)
6.936
GRAVY (calculated)
-0.841
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVCGGLDF KDAESSSASS PIICSTGVKH ISCVGSDDAQ ESDGDDSGYI HQTVIEESKD KAISEPIPES LPLNSLDDES EDKNLATALQ DMFSESMSVV
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.