Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra000740.1-P | |
| Bra035240.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53670.1 | Bra000740.1-P | AT4G11240.1 | 21798944 |
| AT3G53670.1 | Bra035240.1-P | AT4G11240.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY52744 | Canola | nucleus | 90.95 | 92.35 |
| Bra007019.1-P | Field mustard | nucleus | 71.36 | 70.3 |
| AT3G53670.1 | Thale cress | nucleus | 67.84 | 66.5 |
| Bra000003.1-P | Field mustard | nucleus | 54.27 | 57.14 |
| Bra005191.1-P | Field mustard | nucleus | 51.76 | 56.59 |
| Bra017183.1-P | Field mustard | nucleus | 52.76 | 55.56 |
Protein Annotations
Description
AT2G37480 (E=3e-020) | unknown protein
Coordinates
chrA07:+:11591204..11592251
Molecular Weight (calculated)
21297.2 Da
IEP (calculated)
9.688
GRAVY (calculated)
-1.111
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLDHKDAES HLTSTSASSS NKCCNNGSSH FSGTGSDDAQ ESDGDDSGGY IHQYVNEDSK YIIKPILKSS VDDGEGEDKK NLATAESMTA VTVIPAIKGS
101: REKYGKPLEK LSVSWAEDVY DPPPSLVSHT RSKKQQPQKS KSRDSLKKNG KKGQKGSSNS SSSSSRGSKD KKSSSSRSKH SRDNKFGWAT QTSIVAASS
101: REKYGKPLEK LSVSWAEDVY DPPPSLVSHT RSKKQQPQKS KSRDSLKKNG KKGQKGSSNS SSSSSRGSKD KKSSSSRSKH SRDNKFGWAT QTSIVAASS
001: MSSVCGGLDF KDAESSSASS PIICSTGVKH ISCVGSDDAQ ESDGDDSGYI HQTVIEESKD KAISEPIPES LPLNSLDDES EDKNLATALQ DMFSESMSVV
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
101: TLIPAIKGGR EKHGKSLEKL SVSWAEDVYD PPPSIVSHTR SKKQQPQKSK SKDNLKKNGK KGQKGSSNSR SSKDKKQISS RSSKYSRDKF DWTTQMSVLA
201: ASS
Arabidopsis Description
Uncharacterized protein At3g53670; F4P12.370 [Source:UniProtKB/TrEMBL;Acc:Q9LFF4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.