Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 2
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G37480.1 | CDX77309 | AT1G48480.1 | 15618630 |
| AT2G37480.1 | CDY41827 | AT1G48480.1 | 15618630 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74957 | Canola | nucleus | 82.98 | 85.71 |
| CDX93375 | Canola | nucleus | 76.6 | 77.01 |
| CDY18441 | Canola | nucleus | 75.0 | 75.0 |
| CDX79736 | Canola | nucleus | 71.28 | 72.04 |
| CDY07787 | Canola | nucleus | 71.81 | 71.81 |
| AT2G37480.1 | Thale cress | nucleus | 71.81 | 69.59 |
| CDY07572 | Canola | nucleus | 58.51 | 55.84 |
| CDX78195 | Canola | nucleus | 60.11 | 55.12 |
| CDY52744 | Canola | nucleus | 56.91 | 54.59 |
| CDX73534 | Canola | nucleus | 59.57 | 52.83 |
Protein Annotations
| EnsemblPlants:CDX91366 | EnsemblPlantsGene:GSBRNA2T00152660001 | PANTHER:PTHR34952 | PANTHER:PTHR34952:SF2 | ProteinID:CDX91366 | ProteinID:CDX91366.1 |
| SEG:seg | UniParc:UPI0004EDD8B7 | MapMan:35.2 | : | : | : |
Description
BnaC04g07840D
Coordinates
chrLK031867:+:285321..286308
Molecular Weight (calculated)
20391.3 Da
IEP (calculated)
9.733
GRAVY (calculated)
-1.154
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSVSGKDSD FEISASSSPT QCSNGSKRLT QHVGSEDSLE PDGDETGFIN QTVNEESATK STLGSLPLKS SDDEDEDENL TTAPVVLIPA IKGSREKHGL
101: TLKKTSVSWA ADVYDPPPSI ASHTRNKKQQ QKSKSKDSHR KNGKKGQKSK DNSNSSRSGK DNKKQASRKH SREKFDWVTQ MPIVAASS
101: TLKKTSVSWA ADVYDPPPSI ASHTRNKKQQ QKSKSKDSHR KNGKKGQKSK DNSNSSRSGK DNKKQASRKH SREKFDWVTQ MPIVAASS
001: MSSVCGKLDF KDADFDISTS SPTQCSKGSE HTSFTGSEDS QESDGDETGY IDPTVNDETA VQDFGKSVLS PNSSDDEDKD ENLMTTPIVL IPAIKGSREK
101: YGLSLRKSSV SWGADVYDPP PSIASHTVTR SKKQQQKSKS KDNHRKTGKK GQKSKDNSSS RGGSSKDKKQ ASRKHSRDKF DWVTQMPIVA ASS
101: YGLSLRKSSV SWGADVYDPP PSIASHTVTR SKKQQQKSKS KDNHRKTGKK GQKSKDNSSS RGGSSKDKKQ ASRKHSRDKF DWVTQMPIVA ASS
Arabidopsis Description
Uncharacterized protein At2g37490 [Source:UniProtKB/TrEMBL;Acc:Q9ZUR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.