Factsheet for Bra010468.1-P

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:

plastid 1
cytosol 1
plasma membrane 2
vacuole 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52351	Canola	cytosol, peroxisome, plasma membrane	96.99	98.61
AT4G25350.1	Thale cress	cytosol	80.0	78.39
Bra016284.1-P	Field mustard	cytosol	66.03	64.44
Bra024691.1-P	Field mustard	cytosol	65.48	62.4
Bra019690.1-P	Field mustard	cytosol	57.53	51.85
Bra019688.1-P	Field mustard	cytosol	54.66	51.35
Bra026863.1-P	Field mustard	cytosol	56.3	51.06
Bra017394.1-P	Field mustard	cytosol	56.16	50.87
Bra017395.1-P	Field mustard	cytosol, nucleus, plasma membrane	55.48	50.19
Bra019686.1-P	Field mustard	cytosol	55.75	50.19
Bra026864.1-P	Field mustard	cytosol, peroxisome, plasma membrane	55.34	49.88
Bra024782.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.66	49.81
Bra024784.1-P	Field mustard	cytosol, nucleus, plasma membrane	52.74	49.61
Bra026565.1-P	Field mustard	cytosol	55.21	49.51
Bra024783.1-P	Field mustard	cytosol, peroxisome, plasma membrane	54.11	49.38
Bra004383.1-P	Field mustard	cytosol	49.73	46.24
Bra017393.1-P	Field mustard	cytosol, peroxisome, plasma membrane	45.62	45.99
Bra033080.1-P	Field mustard	cytosol, nucleus, plasma membrane	48.9	45.36
Bra036222.1-P	Field mustard	cytosol, nucleus, plasma membrane	48.36	44.4
Bra019689.1-P	Field mustard	cytosol, nucleus, plasma membrane	44.11	43.4
Bra004334.1-P	Field mustard	cytosol	33.01	31.3
Bra038357.1-P	Field mustard	cytosol	33.56	31.05
Bra014948.1-P	Field mustard	cytosol	32.6	30.36
Bra023727.1-P	Field mustard	cytosol	32.33	30.1
Bra004017.1-P	Field mustard	cytosol	29.86	29.14
Bra035386.1-P	Field mustard	golgi, plasma membrane, plastid	14.52	23.25
Bra022884.1-P	Field mustard	plasma membrane	13.97	22.62
Bra012265.1-P	Field mustard	cytosol	3.42	11.74

Protein Annotations

MapMan:24.2.7.4	MapMan:25.3.2.2	EnsemblPlantsGene:Bra010468	EnsemblPlants:Bra010468.1	EnsemblPlants:Bra010468.1-P	ncoils:Coil
InterPro:EXS_C	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009791	GO:GO:0009960	GO:GO:0009987	GO:GO:0010017
GO:GO:0010468	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0040007	GO:GO:0045793
GO:GO:0080050	GO:GO:0080113	InterPro:IPR004331	InterPro:IPR004342	UniProt:M4D1W8	PFAM:PF03105
PFAM:PF03124	InterPro:PHO1_SPX	PFscan:PS51380	PFscan:PS51382	PANTHER:PTHR10783	PANTHER:PTHR10783:SF43
InterPro:SPX_dom	TMHMM:TMhelix	UniParc:UPI0002545A42	SEG:seg	:	:

Description

AT4G25350 (E=0.0) SHB1 | SHB1 (SHORT HYPOCOTYL UNDER BLUE1)

Coordinates

chrA08:+:14688253..14691500

Molecular Weight (calculated)

85084.3 Da

IEP (calculated)

9.810

GRAVY (calculated)

-0.064

Length

730 amino acids

Sequence
(BLAST)

001: MRFGRQFVSK MIPEWQEAYI DYAYLKTILQ DIQATRKISV SNSQSKPSFA RNLTKRYTRN ASVSENHVIV FNAVTHADFE HDMTYETAFL KAGEPGGDSE
101: AAFFRTLDRE FNKVNSFYKL KVEKARHESL ALTRQMEALV AFRFRVKEKK PSSTDSVSVD INALSSKSKE NKVTVGDLIK NEANESILEG IRMNRTLETP
201: LSAIKTILKV HKQEELKFTR ENLKKVEERL QRAFIEFYQK LGHLKNYSFL NTSAVSKIMK KYDKISARNA AKQYMEMVDS SYLTSSDEIH KLMVRVESTF
301: IQHFSNSNRR QGMNLLRPKE NKELHRTTFS TGFFFGCATS LIIALALIIH ARNIMGTPGQ RTYMETMFPL YRFFGFVVLH VVMYAANIYF WGIYRVNYSF
401: IFGFKQGTEL GYRHVLLLSF GLGTLSLCAV LLNLDMEMDS QTKDYRIVTE LIPLFLLALV VAITLCPFNI LYRSSRFFFL TVLFRCIAAP FYTVNLPDFF
501: LADQLTSQVQ SLRSLEFYIC YYGFGDFRQR QRNTCRSNDV FTTFYFIVAV IPYWLRFLQC IRRIIEENDL SHGYNAIKYL LTIVAACLRT AYTLNRGTTW
601: NITAWIFSGV ATLYATYWDI VIDWGLLQRG CKNSFLREKL LVPHKTVYYA AMVLNVLLRL VWLQTVLDLK FSFLHRETLV ALLACLEIIR RGIWNFFRLE
701: NEHLNNVGKF RAFKSVPLPF NYQEDRDQDN

Best Arabidopsis Sequence Match ( AT4G25350.1 )
(BLAST)

001: MRFGKEFVSQ MIPEWQEAYI DYAYLKTILQ DIQASRNRSD SNNQSSTPSF ARNLTRRYNR DALVSENHDI VVNTVTRLEE GLETAAYETT FLKAGEAGGD
101: FEVTFFRTLD REFNKVNNFY RLKVETARTE ALALNKQMDA LIAFRHKVMD QNQKNPSVFD SVSEDINGSA SEVGSSSKCT EHNVALADLM RNEDTSNESI
201: LERIRMNKTR EITPLSAIKT ILKVHKQDEL KFTRDNLKEV EKRLQVAFIE FYQKLRHLKN YSFLNASAVS KIMKKYDKIA KRNAAKLYME MVDKSFLSSS
301: EEVHKLLLKV ESIFIEHFSN SNRREGMSHL RPKINKERHL ITFSTGFFFG CGISLIVALG LIIHARNIMG TPGQRTYMET MFPLYRFFGF VVLHMDVYAA
401: NIYFWRRYRV NYSFIFGFKQ GTELGYRHVL LLSFGLGTLS LCAVLLNLDM EMDAQTKDYR LVTELIPLFL LVLVIIIVLC PFNILYRSSR FFFLSVLFRC
501: IAAPFYAVHL PDFFLGDQLT SQVQALRSLE FYICYYGFGD FRYRRRNTCT SNIGFRTFYF IVAVIPYWLR FLQCIRRMVE DRDLSHGYNG IKYLLTIVAA
601: SLRTAYTLNR GSNWNITAWV FSGVATFYGT YWDIVLDWGL LQRGCKNSFL RDKLLVPHKT VYYAAMVLNV LLRLVWLQTV LDLKFSFLHR ETMVALMACL
701: EIIRRGIWNF FRLENEHLNN VGRYRAFKTV PLPFNYEEDG DHHNN

Arabidopsis Description

PHO1-H4Phosphate transporter PHO1 homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6R8G6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.