CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	extracellular, plasma membrane
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001122.1-P	Field mustard	extracellular	100.0	100.0
CDY40673	Canola	extracellular	100.0	99.29
CDX74171	Canola	extracellular	83.57	82.98
CDY40672	Canola	extracellular	82.14	81.56
CDX74169	Canola	extracellular	64.29	42.06
CDY40674	Canola	extracellular	64.29	42.06
VIT_14s0081g00020.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	32.14	29.61

Protein Annotations

Gene3D:2.40.40.10	MapMan:35.1	GO:A0A078CBK4	InterPro:Barwin_CS	InterPro:Barwin_dom	EnsemblPlants:CDX74170
ProteinID:CDX74170	ProteinID:CDX74170.1	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607
GO:GO:0042742	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00111932001	InterPro:IPR001153	InterPro:IPR036908	PFAM:PD004535
PFAM:PF00967	PRINTS:PR00602	ScanProsite:PS00771	ScanProsite:PS00772	PFscan:PS51174	PANTHER:PTHR22595
PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI000059E81F	:

Description

BnaA03g28770D

Coordinates

chrLK031800:+:1643927..1644774

Molecular Weight (calculated)

15504.1 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.326

Length

140 amino acids

Sequence
(BLAST)

001: MSRLSICLLV LLCAFAAKTA AQSANVRATY HFYNPAQNGW DLYRVSAYCS TWDGNQPLEW RQRYGWTAFC GPAGPRGRDS CGRCLRVTNT GTQAQATVRI
101: VDQCSNGGLD LDEAVFKQID TDGQGYARGN LNVNYEFVNC

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.