CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03088
CDY17621

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04720.1	CDY03088	AT2G01950.1	19000166
AT3G04720.1	CDY17621	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001123.1-P	Field mustard	extracellular	98.6	98.6
CDX74169	Canola	extracellular	98.6	98.6
AT3G04720.1	Thale cress	extracellular	83.18	83.96
KRG96979	Soybean	extracellular	63.55	64.45
CDX74170	Canola	extracellular	42.06	64.29
CDY40673	Canola	extracellular	42.06	63.83
KRG96980	Soybean	extracellular	56.07	61.86
Solyc01g097280.2.1	Tomato	extracellular	57.01	61.31
CDX74171	Canola	extracellular	39.72	60.28
CDY40672	Canola	extracellular	39.25	59.57
Solyc01g097270.2.1	Tomato	extracellular	53.27	53.77
PGSC0003DMT400050016	Potato	extracellular	52.8	53.3

Protein Annotations

Gene3D:2.40.40.10	Gene3D:3.30.60.10	MapMan:35.1	GO:A0A078HTM8	UniProt:A0A078HTM8	InterPro:Barwin_CS
InterPro:Barwin_dom	EnsemblPlants:CDY40674	ProteinID:CDY40674	ProteinID:CDY40674.1	InterPro:Chitin-bd_1	InterPro:Chitin-binding_1_CS
InterPro:Endochitinase-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0008061	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00071554001	InterPro:IPR001002
InterPro:IPR001153	InterPro:IPR036861	InterPro:IPR036908	PFAM:PD000609	PFAM:PD004535	PFAM:PF00187
PFAM:PF00967	PRINTS:PR00451	PRINTS:PR00602	ScanProsite:PS00026	ScanProsite:PS00771	ScanProsite:PS00772
PFscan:PS50941	PFscan:PS51174	PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SMART:SM00270
SUPFAM:SSF50685	SUPFAM:SSF57016	SignalP:SignalP-noTM	UniParc:UPI0004EED168	SEG:seg	:

Description

BnaC03g33900DBnaC03g33900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HTM8]

Coordinates

chrLK032477:-:68988..70295

Molecular Weight (calculated)

23130.9 Da

IEP (calculated)

7.017

GRAVY (calculated)

-0.368

Length

214 amino acids

Sequence
(BLAST)

001: MKIRLSITLV LLSYTAAMVA GQQCGRQAGG QTCAGNICCS QYGYCGTTAD YCSPDNNCQS NCWGSGPPSG SGESATGVRA TYHYYNPAQN NWDLRAVSAY
101: CSTWDADKPY SWRSKYGWTA FCGPAGPRGQ ASCGKCLRVR NTRTNAAVTV RIVDQCSNGG LDLDVAMFNQ IDTDGDGYRK GHLIVDYQFV DCGNELIDQP
201: ADFKNILVSA TDRV

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.