Factsheet for Solyc01g097270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 6
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

extracellular: 22364583
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04720.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050016	Potato	extracellular	82.08	82.08
Solyc01g097280.2.1	Tomato	extracellular	65.57	69.85
KRG96980	Soybean	extracellular	60.38	65.98
KRG96979	Soybean	extracellular	61.32	61.61
Solyc01g097240.2.1	Tomato	extracellular	40.57	60.14
AT3G04720.1	Thale cress	extracellular	53.77	53.77
Bra001123.1-P	Field mustard	extracellular	53.77	53.27
CDX74169	Canola	extracellular	53.77	53.27
CDY40674	Canola	extracellular	53.77	53.27

Protein Annotations

Gene3D:2.40.40.10	Gene3D:3.30.60.10	MapMan:35.1	InterPro:Barwin_CS	InterPro:Barwin_dom	InterPro:Chitin-bd_1
InterPro:Chitin-binding_1_CS	InterPro:Endochitinase-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0008061
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	InterPro:IPR001002
InterPro:IPR001153	InterPro:IPR036861	InterPro:IPR036908	UniProt:K4B0B4	PFAM:PD000609	PFAM:PD004535
PFAM:PF00187	PFAM:PF00967	PRINTS:PR00451	PRINTS:PR00602	ScanProsite:PS00026	ScanProsite:PS00771
ScanProsite:PS00772	PFscan:PS50941	PFscan:PS51174	PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf
SMART:SM00270	SUPFAM:SSF50685	SUPFAM:SSF57016	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g097270.2	EnsemblPlants:Solyc01g097270.2.1
UniParc:UPI0002768017	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:88179851..88181214

Molecular Weight (calculated)

22695.7 Da

IEP (calculated)

8.028

GRAVY (calculated)

-0.295

Length

212 amino acids

Sequence
(BLAST)

001: MNKLSSSTPI LLALVLCISL TSVTNAQQCG RQRGGALCGG NLCCSQFGWC GSTPEYCSPS QGCQSQCRGG PTPTPTPGGG AQVRATYHIY NPQNVGWDLN
101: AVSAYCSTWD ANKPYSWRSK YGWTAFCGPV GPRGRDSCGK CLRVTNTRTG AQTTVRIVDQ CSNGGLDLDI NVFRQIDTDG VGNQQGHLIV NYQFVNCGDN
201: VNVPLLSVVD RE

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.