CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 6
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH42483
KRH58580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04720.1	KRH42483	AT2G01950.1	19000166
AT3G04720.1	KRH58580	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96979	Soybean	extracellular	80.93	74.41
KRH68739	Soybean	extracellular	48.45	66.2
KRH34094	Soybean	extracellular	40.21	65.55
KRG92685	Soybean	extracellular	47.94	62.0
Solyc01g097280.2.1	Tomato	extracellular	62.89	61.31
KRH34093	Soybean	extracellular	44.33	60.56
PGSC0003DMT400050016	Potato	extracellular	65.98	60.38
Solyc01g097270.2.1	Tomato	extracellular	65.98	60.38
AT3G04720.1	Thale cress	extracellular	62.89	57.55
CDY40674	Canola	extracellular	61.86	56.07
Bra001123.1-P	Field mustard	extracellular	61.34	55.61
CDX74169	Canola	extracellular	61.34	55.61
KRG92686	Soybean	extracellular	25.77	52.63
KRG96981	Soybean	extracellular	21.65	49.41

Protein Annotations

EntrezGene:100805955	Gene3D:2.40.40.10	Gene3D:3.30.60.10	MapMan:35.1	EMBL:ACUP02012170	InterPro:Barwin_CS
InterPro:Barwin_dom	InterPro:Chitin-bd_1	InterPro:Endochitinase-like_sf	EnsemblPlantsGene:GLYMA_19G245500	GO:GO:0003674	GO:GO:0005488
GO:GO:0006950	GO:GO:0008061	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0042742
GO:GO:0050832	UniProt:I1NCA1	InterPro:IPR001002	InterPro:IPR001153	InterPro:IPR036861	InterPro:IPR036908
EnsemblPlants:KRG96980	ProteinID:KRG96980	ProteinID:KRG96980.1	PFAM:PD000609	PFAM:PD004535	PFAM:PF00187
PFAM:PF00967	PRINTS:PR00602	ScanProsite:PS00771	ScanProsite:PS00772	PFscan:PS50941	PFscan:PS51174
PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SMART:SM00270	SUPFAM:SSF50685	SUPFAM:SSF57016
SignalP:SignalP-noTM	UniParc:UPI000233EBB8	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:+:49240872..49242306

Molecular Weight (calculated)

20699.2 Da

IEP (calculated)

7.476

GRAVY (calculated)

-0.307

Length

194 amino acids

Sequence
(BLAST)

001: MEKVGVRLVV LLCFIVTAAM AQNCGRQAGG QTCGNNLCCS QYGWCGNSED HCSPSKNCQS TCWGSGGGGG GGESASNVRA TYHNYLPEQH GWDLNAVSAY
101: CSTWDAAKPY SWRSKYGWTA FCGPVGPRGR DACGKCLRVT NTGTGANIIV RIVDQCSNGG LDLDVGVFNR IDTDGRGYQQ GHLIVNYQFV NCGD

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.