Factsheet for PGSC0003DMT400050016

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400075691

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04720.1	PGSC0003DMT400075691	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097270.2.1	Tomato	extracellular	82.08	82.08
PGSC0003DMT400050024	Potato	cytosol	43.4	74.19
KRG96980	Soybean	extracellular	60.38	65.98
KRG96979	Soybean	extracellular	59.91	60.19
AT3G04720.1	Thale cress	extracellular	54.25	54.25
Bra001123.1-P	Field mustard	extracellular	53.3	52.8
CDX74169	Canola	extracellular	53.3	52.8
CDY40674	Canola	extracellular	53.3	52.8

Protein Annotations

EntrezGene:102581743	EntrezGene:102582068	Gene3D:2.40.40.10	Gene3D:3.30.60.10	MapMan:35.1	InterPro:Barwin_CS
InterPro:Barwin_dom	InterPro:Chitin-bd_1	InterPro:Chitin-binding_1_CS	InterPro:Endochitinase-like_sf	GO:GO:0003674	GO:GO:0003824
GO:GO:0004518	GO:GO:0004540	GO:GO:0005488	GO:GO:0006139	GO:GO:0006950	GO:GO:0008061
GO:GO:0008150	GO:GO:0008152	GO:GO:0009605	GO:GO:0009607	GO:GO:0009615	GO:GO:0009627
GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009723	GO:GO:0009817	GO:GO:0009987
GO:GO:0016787	GO:GO:0042742	GO:GO:0050832	GO:GO:0080027	GO:GO:0090501	InterPro:IPR001002
InterPro:IPR001153	InterPro:IPR036861	InterPro:IPR036908	UniProt:M1BPP4	PFAM:PD000609	PFAM:PD004535
PFAM:PF00187	PFAM:PF00967	EnsemblPlantsGene:PGSC0003DMG400019435	PGSC:PGSC0003DMG400019435	EnsemblPlants:PGSC0003DMT400050016	PRINTS:PR00451
PRINTS:PR00602	ScanProsite:PS00026	ScanProsite:PS00771	ScanProsite:PS00772	PFscan:PS50941	PFscan:PS51174
PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SMART:SM00270	SUPFAM:SSF50685	SUPFAM:SSF57016
SignalP:SignalP-noTM	UniParc:UPI0002950986	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:75003087..75007580

Molecular Weight (calculated)

22674.7 Da

IEP (calculated)

8.066

GRAVY (calculated)

-0.201

Length

212 amino acids

Sequence
(BLAST)

001: MVKLISNSTI LLSLFLFSIA AIANAQQCGR QKGGALCSGN LCCSQFGWCG STPEFCSPSQ GCQSRCTGTG GSTPTPSGSA QNVRATYHIY NPQNVGWDLN
101: AVSAYCSTWD ANKPLSWRKK YGWTAFCGPV GPRGRDSCGK CLRVTNTRTG AQTTVRIVDQ CSNGGLDLDI NVFQQIDTDG VGNQQGHLIV NYQFVNCGDN
201: VNVPLLSVVD KE

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.