Factsheet for PGSC0003DMT400050024

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1
mitochondrion 3
cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	extracellular
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

cytosol: 22313117
extracellular: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097240.2.1	Tomato	extracellular	95.16	82.52
KRG92685	Soybean	extracellular	75.0	62.0
TraesCS6D01G311600.1	Wheat	extracellular, plastid	66.13	59.85
TraesCS6A01G332300.1	Wheat	extracellular	66.94	57.24
TraesCS6B01G363100.1	Wheat	extracellular	56.45	56.45
OQU83426	Sorghum	extracellular	65.32	54.36
TraesCS6B01G363000.1	Wheat	extracellular	66.94	53.9
Zm00001d049214_P001	Maize	extracellular	64.52	53.33
TraesCS6D01G311500.1	Wheat	extracellular	66.94	53.21
TraesCS6A01G332600.1	Wheat	extracellular	66.13	52.56
TraesCS6A01G332500.1	Wheat	extracellular	60.48	47.77
EES08702	Sorghum	extracellular	49.19	44.85
PGSC0003DMT400050016	Potato	extracellular	74.19	43.4
HORVU6Hr1G080540.1	Barley	extracellular	49.19	34.66
TraesCS6A01G332400.1	Wheat	extracellular	30.65	30.65

Protein Annotations

Gene3D:2.40.40.10	MapMan:35.1	ProteinID:AFW90570	ProteinID:AFW90570.1	InterPro:Barwin_CS	InterPro:Barwin_dom
GO:GO:0006950	GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832
InterPro:IPR001153	InterPro:IPR036908	EMBL:JX576214	UniProt:M1BPP7	PFAM:PD004535	PFAM:PF00967
EnsemblPlantsGene:PGSC0003DMG400019437	PGSC:PGSC0003DMG400019437	EnsemblPlants:PGSC0003DMT400050024	PRINTS:PR00602	ScanProsite:PS00771	ScanProsite:PS00772
PFscan:PS51174	PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SUPFAM:SSF50685	UniParc:UPI00029694E4

Description

Pathogen-and wound-inducible antifungal protein CBP20 [Source:PGSC_GENE;Acc:PGSC0003DMG400019437]

Coordinates

chr1:-:74981030..74982054

Molecular Weight (calculated)

13700.9 Da

IEP (calculated)

8.104

GRAVY (calculated)

-0.497

Length

124 amino acids

Sequence
(BLAST)

001: MAAAQSATNV RATYHLYNPQ NINWDLRTAS AYCATWDADK PLAWRQRYGW TAFCGPAGPR GQASCGRCLR VTNTGTGTQE TVRIVDQCSN GGLDLDVNVF
101: NRLDTNGLGY QRGNLNVNYE FVNC

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.