Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G332300.1 | Wheat | extracellular | 72.61 | 78.62 |
| TraesCS6B01G363000.1 | Wheat | extracellular | 75.16 | 76.62 |
| TraesCS6A01G332600.1 | Wheat | extracellular | 71.34 | 71.79 |
| Zm00001d049214_P001 | Maize | extracellular | 58.6 | 61.33 |
| OQU83426 | Sorghum | extracellular | 57.96 | 61.07 |
| PGSC0003DMT400050024 | Potato | cytosol | 47.77 | 60.48 |
| TraesCS1A01G355300.1 | Wheat | extracellular | 50.96 | 55.17 |
| TraesCS6A01G403200.1 | Wheat | extracellular | 50.96 | 55.17 |
| TraesCS6A01G332400.1 | Wheat | extracellular | 42.04 | 53.23 |
| Solyc01g097240.2.1 | Tomato | extracellular | 47.13 | 51.75 |
| TraesCS3A01G517100.1 | Wheat | extracellular | 47.13 | 50.68 |
| HORVU6Hr1G080540.1 | Barley | extracellular | 52.23 | 46.59 |
| KRG92685 | Soybean | extracellular | 43.31 | 45.33 |
| TraesCS2A01G551000.1 | Wheat | extracellular, unclear | 44.59 | 42.17 |
Protein Annotations
| Gene3D:2.40.40.10 | MapMan:35.1 | InterPro:Barwin_dom | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0042742 | GO:GO:0050832 | InterPro:IPR001153 | InterPro:IPR036908 | PFAM:PD004535 |
| PFAM:PF00967 | PRINTS:PR00602 | PFscan:PS51174 | PANTHER:PTHR22595 | PANTHER:PTHR22595:SF59 | InterPro:RlpA-like_sf |
| SUPFAM:SSF50685 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS6A01G332500 | EnsemblPlants:TraesCS6A01G332500.1 | SEG:seg |
Description
No Description!
Coordinates
chr6A:+:564238627..564239382
Molecular Weight (calculated)
16360.4 Da
IEP (calculated)
4.401
GRAVY (calculated)
0.155
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMVVAAGAR MPVSVLVLVA LVVVCLSANG AAAQQASSVA ATYNLYNPEK INWDLRVASI FCATWDADMP LAWRQRYGWT AFCGPAGAHG QPSCGRCLQV
101: RDEQGDGGAD GGEGGGPVRQ IGGLDLDVTV FRQIDTDGGG VANGHLVVDY QFVGCQD
101: RDEQGDGGAD GGEGGGPVRQ IGGLDLDVTV FRQIDTDGGG VANGHLVVDY QFVGCQD
001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
Arabidopsis Description
HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.