Factsheet for TraesCS2A01G551000.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G582100.1	Wheat	extracellular	93.98	95.12
TraesCS2D01G552100.1	Wheat	extracellular	93.98	95.12
HORVU2Hr1G120530.1	Barley	extracellular	94.58	94.58
TraesCS3A01G517100.1	Wheat	extracellular	72.29	82.19
Os11t0592000-01	Rice	extracellular	70.48	78.0
TraesCS1A01G355300.1	Wheat	extracellular	66.87	76.55
Os11t0592100-01	Rice	extracellular	68.07	74.34
TraesCS6A01G403200.1	Wheat	extracellular	63.25	72.41
GSMUA_Achr1P23250_001	Banana	extracellular	60.84	70.63
GSMUA_Achr6P01380_001	Banana	extracellular	60.24	68.97
VIT_14s0081g00030.t01	Wine grape	extracellular	59.04	68.53
GSMUA_Achr6P01350_001	Banana	extracellular	59.64	68.28
Os11t0591800-01	Rice	extracellular	61.45	64.56
TraesCS6A01G332300.1	Wheat	extracellular	48.19	55.17
TraesCS6A01G332600.1	Wheat	extracellular	50.6	53.85
VIT_14s0081g00050.t01	Wine grape	extracellular	57.83	48.73
TraesCS6A01G332500.1	Wheat	extracellular	42.17	44.59
TraesCS6A01G332400.1	Wheat	extracellular	21.08	28.23

Protein Annotations

Gene3D:2.40.40.10	MapMan:35.1	InterPro:Barwin_CS	InterPro:Barwin_dom	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	InterPro:IPR001153	InterPro:IPR036908
PFAM:PD004535	PFAM:PF00967	PRINTS:PR00602	ScanProsite:PS00772	PFscan:PS51174	PANTHER:PTHR22595
PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2A01G551000	EnsemblPlants:TraesCS2A01G551000.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2A:-:758055562..758056062

Molecular Weight (calculated)

17670.6 Da

IEP (calculated)

6.883

GRAVY (calculated)

-0.184

Length

166 amino acids

Sequence
(BLAST)

001: MAARLALVAT LLCAGAAAAA AQQASNVRAT YHYYRPAENG WDLGAPAVSA YCSTWDAGKP YSWRSKYGWT AFCGPAGPRG QASCGRCIRV TNTGTGAQIT
101: ARIVDQCANG GLDLDWDTVF VKIDTDGMGY QRGHLIVNYE FVDCGDNHIN FHGKNETLPA STGAVE

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.