Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
21255809
extracellular: 23159799 extracellular: 24083427 extracellular: 25047395 plastid: 27992503 extracellular: 28232208 |
msms PMID:
25047395
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang, South Korea.
msms PMID:
23159799
doi
Plant Molecular Biology and Biotechnology Research Center, Gyeongsang National University, Jinju, 660-701, South Korea.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID:
21255809
doi
National Agriculture and Food Research Organization, National Agricultural Research Center for Hokkaido Region, 1-Hitsujigaoka, Toyohira-ku, Sapporo 062-8555, Japan. shinano@affrc.go.jp
msms PMID:
24083427
doi
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID:
28232208
doi
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G113120.1 | Barley | extracellular | 82.0 | 84.25 |
| Os11t0592100-01 | Rice | extracellular | 84.67 | 83.55 |
| HORVU3Hr1G113620.1 | Barley | extracellular | 79.33 | 81.51 |
| TraesCS3D01G524700.1 | Wheat | extracellular | 80.0 | 81.08 |
| TraesCS3B01G584700.1 | Wheat | extracellular | 78.67 | 80.82 |
| TraesCS3A01G517100.1 | Wheat | extracellular | 78.67 | 80.82 |
| GSMUA_Achr1P23250_001 | Banana | extracellular | 72.0 | 75.52 |
| GSMUA_Achr6P01380_001 | Banana | extracellular | 70.0 | 72.41 |
| HORVU2Hr1G120530.1 | Barley | extracellular | 79.33 | 71.69 |
| Os11t0592200-01 | Rice | extracellular | 69.33 | 71.23 |
| GSMUA_Achr6P01350_001 | Banana | extracellular | 68.67 | 71.03 |
| VIT_14s0081g00030.t01 | Wine grape | extracellular | 67.33 | 70.63 |
| TraesCS2B01G581900.1 | Wheat | extracellular | 78.0 | 70.48 |
| TraesCS2A01G551000.1 | Wheat | extracellular, unclear | 78.0 | 70.48 |
| TraesCS2D01G552100.1 | Wheat | extracellular | 76.67 | 70.12 |
| TraesCS2B01G582000.1 | Wheat | extracellular | 77.33 | 69.88 |
| TraesCS2B01G582100.1 | Wheat | extracellular | 75.33 | 68.9 |
| TraesCS2B01G581800.1 | Wheat | extracellular | 52.0 | 61.9 |
| Os11t0591800-01 | Rice | extracellular | 64.67 | 61.39 |
| VIT_14s0081g00050.t01 | Wine grape | extracellular | 66.67 | 50.76 |
Protein Annotations
| Gene3D:2.40.40.10 | MapMan:35.1 | EntrezGene:4350821 | ProteinID:ABA94530.1 | EMBL:AK121059 | ProteinID:BAF28551.1 |
| ProteinID:BAT14680.1 | InterPro:Barwin_CS | InterPro:Barwin_dom | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0042742 | GO:GO:0050832 | InterPro:IPR001153 | InterPro:IPR036908 | EnsemblPlantsGene:Os11g0592000 |
| EnsemblPlants:Os11t0592000-01 | PFAM:PD004535 | PFAM:PF00967 | PRINTS:PR00602 | ScanProsite:PS00771 | PFscan:PS51174 |
| PANTHER:PTHR22595 | PANTHER:PTHR22595:SF59 | UniProt:Q2R1V2 | InterPro:RlpA-like_sf | SUPFAM:SSF50685 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI00001A53DC | RefSeq:XP_015615550.1 | SEG:seg | : | : |
Description
PATHOGENESIS-RELATED GENE 4CSimilar to Barwin. (Os11t0592000-01)
Coordinates
chr11:+:22502008..22502923
Molecular Weight (calculated)
16257.4 Da
IEP (calculated)
8.031
GRAVY (calculated)
-0.029
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MAMAMRRVVL VAAVLCAVVA MVTAQEASNV RATYHYYRPA QNNWDLGAPA VSAYCATWDA NKPLSWRQKY GWTAFCGPVG PRGQAACGKC LLVTNTATGA
101: QITARIVDQC ANGGLDLDWD TVFTKIDTDG QGYQKGHLIV NYKFVDCGDN
101: QITARIVDQC ANGGLDLDWD TVFTKIDTDG QGYQKGHLIV NYKFVDCGDN
001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
Arabidopsis Description
HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.