Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
26928395
|
msms PMID:
26928395
doi
Agricultural and Environmental Proteomics, Department of Systems Biology, Technical University of Denmark , Søltofts Plads, Building 224, DK-2800 Kgs. Lyngby, Denmark., Enzyme and Protein Chemistry, Department of Systems Biology, Technical University of Denmark , Elektrovej, Building 375, DK-2800 Kgs. Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G113120.1 | Barley | extracellular | 96.58 | 96.58 |
| TraesCS3D01G524700.1 | Wheat | extracellular | 94.52 | 93.24 |
| TraesCS3B01G584700.1 | Wheat | extracellular | 92.47 | 92.47 |
| TraesCS3A01G517100.1 | Wheat | extracellular | 91.78 | 91.78 |
| Os11t0592000-01 | Rice | extracellular | 81.51 | 79.33 |
| Os11t0592100-01 | Rice | extracellular | 77.4 | 74.34 |
| HORVU2Hr1G120530.1 | Barley | extracellular | 82.88 | 72.89 |
| GSMUA_Achr1P23250_001 | Banana | extracellular | 71.23 | 72.73 |
| VIT_14s0081g00030.t01 | Wine grape | extracellular | 67.81 | 69.23 |
| GSMUA_Achr6P01350_001 | Banana | extracellular | 68.49 | 68.97 |
| GSMUA_Achr6P01380_001 | Banana | extracellular | 68.49 | 68.97 |
| Os11t0591800-01 | Rice | extracellular | 66.44 | 61.39 |
| VIT_14s0081g00050.t01 | Wine grape | extracellular | 66.44 | 49.24 |
| HORVU6Hr1G092630.3 | Barley | extracellular, plastid | 72.6 | 42.23 |
| HORVU6Hr1G080540.1 | Barley | extracellular | 37.67 | 31.25 |
Protein Annotations
| Gene3D:2.40.40.10 | MapMan:35.1 | UniProt:A0A287MRF4 | InterPro:Barwin_CS | InterPro:Barwin_dom | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0042742 | GO:GO:0050832 | EnsemblPlantsGene:HORVU3Hr1G113620 |
| EnsemblPlants:HORVU3Hr1G113620.1 | InterPro:IPR001153 | InterPro:IPR036908 | PFAM:PD004535 | PFAM:PF00967 | PRINTS:PR00602 |
| ScanProsite:PS00771 | ScanProsite:PS00772 | PFscan:PS51174 | PANTHER:PTHR22595 | PANTHER:PTHR22595:SF59 | InterPro:RlpA-like_sf |
| SUPFAM:SSF50685 | SignalP:SignalP-noTM | UniParc:UPI00000AB98A | SEG:seg | : | : |
Description
No Description!
Coordinates
chrchr3H:-:688794127..688795251
Molecular Weight (calculated)
15694.6 Da
IEP (calculated)
8.274
GRAVY (calculated)
-0.073
Length
146 amino acids
Sequence
(BLAST)
(BLAST)
001: MAARLMLVAA LLCAATAMAT AQQANNVRAT YHYYRPAQNN WDLGAPAVSA YCATWDASKP LSWRSKYGWT AFCGPAGPLG QAACGKCLRV TNPATGAQIT
101: ARIVDKCANG GLDLDWDTVF AKIDTNGIGF QQGHLNVNYQ FVDCRD
101: ARIVDKCANG GLDLDWDTVF AKIDTNGIGF QQGHLNVNYQ FVDCRD
001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
Arabidopsis Description
HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.