Subcellular Localization
min:
: max
Winner_takes_all: plastid, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- extracellular 2
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G386800.1 | Wheat | extracellular | 51.79 | 89.66 |
| TraesCS6A01G403200.1 | Wheat | extracellular | 51.0 | 88.28 |
| TraesCS6B01G446400.1 | Wheat | extracellular | 51.0 | 88.28 |
| TraesCS6B01G446300.1 | Wheat | extracellular | 42.23 | 85.48 |
| HORVU3Hr1G113120.1 | Barley | extracellular | 42.23 | 72.6 |
| HORVU3Hr1G113620.1 | Barley | extracellular | 42.23 | 72.6 |
| Zm00001d048949_P001 | Maize | extracellular | 42.63 | 71.81 |
| Zm00001d048950_P001 | Maize | extracellular | 42.63 | 71.33 |
| GSMUA_Achr1P23250_001 | Banana | extracellular | 39.44 | 69.23 |
| VIT_14s0081g00030.t01 | Wine grape | extracellular | 38.65 | 67.83 |
| EES08758 | Sorghum | extracellular | 40.24 | 67.79 |
| GSMUA_Achr6P01350_001 | Banana | extracellular | 37.85 | 65.52 |
| HORVU2Hr1G120530.1 | Barley | extracellular | 43.03 | 65.06 |
| GSMUA_Achr6P01380_001 | Banana | extracellular | 37.05 | 64.14 |
| VIT_14s0081g00050.t01 | Wine grape | extracellular | 38.25 | 48.73 |
| HORVU6Hr1G080540.1 | Barley | extracellular | 25.1 | 35.8 |
Protein Annotations
| Gene3D:2.40.40.10 | MapMan:35.1 | UniProt:A0A287V7Q7 | InterPro:Barwin_CS | InterPro:Barwin_dom | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0042742 | GO:GO:0050832 | EnsemblPlantsGene:HORVU6Hr1G092630 |
| EnsemblPlants:HORVU6Hr1G092630.3 | InterPro:IPR001153 | InterPro:IPR036908 | PFAM:PD004535 | PFAM:PF00967 | PRINTS:PR00602 |
| ScanProsite:PS00772 | PFscan:PS51174 | PANTHER:PTHR22595 | PANTHER:PTHR22595:SF59 | InterPro:RlpA-like_sf | SUPFAM:SSF50685 |
| UniParc:UPI000B486694 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:-:577736144..577737231
Molecular Weight (calculated)
27420.7 Da
IEP (calculated)
8.625
GRAVY (calculated)
-0.233
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPFTAWKMS PSSLAHPWPD FFFFLLAHAH DSTSRDRCGK TVHGKRKVHR TCRCFIDQLP LYNAPARPEE ATRIAPGRRP LDRRQAATDH CIRIHILPDP
101: KESRSTMAGR AVLAAVLLCA LAAMAAAQSA SNVRATYNLY SPQKNNWDLN TAGVYCATWD AGMSLAWRSK YGWTAFCGPA GPIGQASCGK CIQVTNTATG
201: AQITARIVDK CSNGGLDLDL DTVFSKIDTD GVGMQQGHLT VNYQFVDCGD N
101: KESRSTMAGR AVLAAVLLCA LAAMAAAQSA SNVRATYNLY SPQKNNWDLN TAGVYCATWD AGMSLAWRSK YGWTAFCGPA GPIGQASCGK CIQVTNTATG
201: AQITARIVDK CSNGGLDLDL DTVFSKIDTD GVGMQQGHLT VNYQFVDCGD N
001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
Arabidopsis Description
HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.