Factsheet for TraesCS2D01G552100.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

extracellular: 19786127

msms PMID: 19786127 doi

FJ Kong, A Oyanagi, S Komatsu

National Institute of Crop Science, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G581900.1	Wheat	extracellular	95.73	94.58
TraesCS2B01G582000.1	Wheat	extracellular	95.73	94.58
TraesCS2A01G551000.1	Wheat	extracellular, unclear	95.12	93.98
HORVU2Hr1G120530.1	Barley	extracellular	93.9	92.77
TraesCS2B01G581800.1	Wheat	extracellular	69.51	90.48
TraesCS3D01G524700.1	Wheat	extracellular	73.78	81.76
Os11t0592000-01	Rice	extracellular	70.12	76.67
TraesCS1D01G355100.1	Wheat	extracellular	65.85	74.48
TraesCS6D01G386800.1	Wheat	extracellular	65.24	73.79
Os11t0592100-01	Rice	extracellular	68.29	73.68
GSMUA_Achr1P23250_001	Banana	extracellular	62.2	71.33
GSMUA_Achr6P01380_001	Banana	extracellular	62.2	70.34
GSMUA_Achr6P01350_001	Banana	extracellular	61.59	69.66
VIT_14s0081g00030.t01	Wine grape	extracellular	59.76	68.53
Os11t0591800-01	Rice	extracellular	61.59	63.92
TraesCS6D01G311600.1	Wheat	extracellular, plastid	48.17	57.66
TraesCS6D01G311500.1	Wheat	extracellular	49.39	51.92
VIT_14s0081g00050.t01	Wine grape	extracellular	58.54	48.73

Protein Annotations

Gene3D:2.40.40.10	MapMan:35.1	InterPro:Barwin_CS	InterPro:Barwin_dom	GO:GO:0006950	GO:GO:0008150
GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	InterPro:IPR001153	InterPro:IPR036908
PFAM:PD004535	PFAM:PF00967	PRINTS:PR00602	ScanProsite:PS00772	PFscan:PS51174	PANTHER:PTHR22595
PANTHER:PTHR22595:SF59	InterPro:RlpA-like_sf	SUPFAM:SSF50685	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS2D01G552100	EnsemblPlants:TraesCS2D01G552100.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2D:-:627361197..627361691

Molecular Weight (calculated)

17507.5 Da

IEP (calculated)

7.389

GRAVY (calculated)

-0.125

Length

164 amino acids

Sequence
(BLAST)

001: MAARLALVAA LLCAGATAAA AQQASNVRAT YHYYSPAQNG WDLGAVSAYC STWDAGKPFS WRSKYGWTAF CGPAGPRGQA SCGRCIRVTN TGTGAQITAR
101: IVDQCANGGL DLDWDTVFVK IDTDGMGYQR GHLIVNYQFV DCGDNHINFH GKNETLPASI HAVE

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.