Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 9
- endoplasmic reticulum 5
- vacuole 6
- plasma membrane 6
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d049214_P001 | Maize | extracellular | 79.87 | 79.33 |
| TraesCS6D01G311600.1 | Wheat | extracellular, plastid | 71.14 | 77.37 |
| TraesCS6A01G332300.1 | Wheat | extracellular | 71.81 | 73.79 |
| TraesCS6B01G363100.1 | Wheat | extracellular | 57.72 | 69.35 |
| TraesCS6D01G311500.1 | Wheat | extracellular | 72.48 | 69.23 |
| TraesCS6B01G363000.1 | Wheat | extracellular | 69.8 | 67.53 |
| TraesCS6A01G332600.1 | Wheat | extracellular | 69.8 | 66.67 |
| PGSC0003DMT400050024 | Potato | cytosol | 54.36 | 65.32 |
| TraesCS6A01G332500.1 | Wheat | extracellular | 61.07 | 57.96 |
| Solyc01g097240.2.1 | Tomato | extracellular | 53.69 | 55.94 |
| EES08702 | Sorghum | extracellular | 49.66 | 54.41 |
| EES08759 | Sorghum | extracellular | 55.03 | 54.3 |
| EES08760 | Sorghum | extracellular | 54.36 | 53.64 |
| EES08758 | Sorghum | extracellular | 53.02 | 53.02 |
| KRG92685 | Soybean | extracellular | 48.32 | 48.0 |
| HORVU6Hr1G080540.1 | Barley | extracellular | 46.31 | 39.2 |
| TraesCS6A01G332400.1 | Wheat | extracellular | 28.86 | 34.68 |
Protein Annotations
| Gene3D:2.40.40.10 | MapMan:35.1 | EntrezGene:8064421 | UniProt:A0A1Z5RJ97 | InterPro:Barwin_CS | InterPro:Barwin_dom |
| GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0042742 | GO:GO:0050832 |
| InterPro:IPR001153 | InterPro:IPR036908 | EnsemblPlants:OQU83426 | ProteinID:OQU83426 | ProteinID:OQU83426.1 | PFAM:PD004535 |
| PFAM:PF00967 | PRINTS:PR00602 | ScanProsite:PS00771 | PFscan:PS51174 | PANTHER:PTHR22595 | PANTHER:PTHR22595:SF59 |
| InterPro:RlpA-like_sf | EnsemblPlantsGene:SORBI_3005G112700 | SUPFAM:SSF50685 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001A865EB |
| RefSeq:XP_002449459.1 | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr5:+:39112624..39113456
Molecular Weight (calculated)
16140.0 Da
IEP (calculated)
4.733
GRAVY (calculated)
-0.011
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVSRVSLLF VMASVMFVLA AFDGVKAQQA HGVLATYNLY NPQKINWDMR TASTFCATWD ADMPLAWRQR YGWTAFCGPA GDHGEPSCGR CLQVTNRATG
101: ASTVARVVDQ CDNGGLDLDI SVFKQIDTDG GGMANGHLSV DYSFVDCQD
101: ASTVARVVDQ CDNGGLDLDI SVFKQIDTDG GGMANGHLSV DYSFVDCQD
001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
Arabidopsis Description
HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.