Factsheet for Solyc01g097280.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	extracellular
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g008430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G04720.1	Solyc04g008430.1.1	AT2G01950.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g097270.2.1	Tomato	extracellular	69.85	65.57
KRG96979	Soybean	extracellular	68.34	64.45
KRG96980	Soybean	extracellular	61.31	62.89
AT3G04720.1	Thale cress	extracellular	62.81	58.96
Solyc01g097240.2.1	Tomato	extracellular	41.71	58.04
Bra001123.1-P	Field mustard	extracellular	61.81	57.48
CDX74169	Canola	extracellular	61.81	57.48
CDY40674	Canola	extracellular	61.31	57.01

Protein Annotations

Gene3D:2.40.40.10	Gene3D:3.30.60.10	MapMan:35.1	InterPro:Barwin_CS	InterPro:Barwin_dom	InterPro:Chitin-bd_1
InterPro:Chitin-binding_1_CS	InterPro:Endochitinase-like_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0006950	GO:GO:0008061
GO:GO:0008150	GO:GO:0009605	GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	InterPro:IPR001002
InterPro:IPR001153	InterPro:IPR036861	InterPro:IPR036908	UniProt:K4B0B5	PFAM:PD000609	PFAM:PD004535
PFAM:PF00187	PFAM:PF00967	PRINTS:PR00451	PRINTS:PR00602	ScanProsite:PS00026	ScanProsite:PS00771
ScanProsite:PS00772	PFscan:PS50941	PFscan:PS51174	PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf
SMART:SM00270	SUPFAM:SSF50685	SUPFAM:SSF57016	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc01g097280.2	EnsemblPlants:Solyc01g097280.2.1
UniParc:UPI0002768018	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:-:88183566..88184361

Molecular Weight (calculated)

21486.3 Da

IEP (calculated)

8.434

GRAVY (calculated)

-0.370

Length

199 amino acids

Sequence
(BLAST)

001: MTKLISINIL FVLIISAIAN AQQCGRQKGG ALCSGNLCCS QFGWCGSTPE FCSPSKGCQS RCTGGGSTPT PTPTPSGSAQ NIRATYHIYN PQNVGWDLNA
101: VSAYCSTWDA NKPYSWRKKY GWTAFCGPVG PRGRDSCGKC LRVTNTRTRA QTTVRIVDQC SNGGLDLDVN VFRQIDTDGN GNHQGHLIVN YQFVDCGDN

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.