CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74171	Canola	extracellular	96.45	96.45
CDX74170	Canola	extracellular	81.56	82.14
CDY40673	Canola	extracellular	81.56	81.56
CDX74169	Canola	extracellular	59.57	39.25
CDY40674	Canola	extracellular	59.57	39.25
VIT_14s0081g00020.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	34.75	32.24

Protein Annotations

Gene3D:2.40.40.10	MapMan:35.1	GO:A0A078HS58	UniProt:A0A078HS58	InterPro:Barwin_CS	InterPro:Barwin_dom
EnsemblPlants:CDY40672	ProteinID:CDY40672	ProteinID:CDY40672.1	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00071551001	InterPro:IPR001153	InterPro:IPR036908
PFAM:PD004535	PFAM:PF00967	PRINTS:PR00602	ScanProsite:PS00771	PFscan:PS51174	PANTHER:PTHR22595
PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0004EC516A	SEG:seg

Description

BnaC03g33880DBnaC03g33880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HS58]

Coordinates

chrLK032477:-:63603..64571

Molecular Weight (calculated)

15605.4 Da

IEP (calculated)

8.556

GRAVY (calculated)

-0.228

Length

141 amino acids

Sequence
(BLAST)

001: MARLSICVFI LLCAFAATAA AQTASNVRTT YHYYYPEQNG WDLYKVSAYC STWKGNQPLE WRRKYGWTAF CGPVGPRGRD SCGRCLRVTN TATGAQATVR
101: IVDQCSNGGL DLDDGVFKQL DTNGQGYARG NMIVNYAFVN C

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.