CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001122.1-P	Field mustard	extracellular	99.29	100.0
CDX74170	Canola	extracellular	99.29	100.0
CDX74171	Canola	extracellular	82.98	82.98
CDY40672	Canola	extracellular	81.56	81.56
CDX74169	Canola	extracellular	63.83	42.06
CDY40674	Canola	extracellular	63.83	42.06
VIT_14s0081g00020.t01	Wine grape	extracellular, mitochondrion, plasma membrane, plastid	31.91	29.61

Protein Annotations

Gene3D:2.40.40.10	MapMan:35.1	GO:A0A078HV79	UniProt:A0A078HV79	InterPro:Barwin_CS	InterPro:Barwin_dom
EnsemblPlants:CDY40673	ProteinID:CDY40673	ProteinID:CDY40673.1	GO:GO:0006950	GO:GO:0008150	GO:GO:0009605
GO:GO:0009607	GO:GO:0042742	GO:GO:0050832	EnsemblPlantsGene:GSBRNA2T00071552001	InterPro:IPR001153	InterPro:IPR036908
PFAM:PD004535	PFAM:PF00967	PRINTS:PR00602	ScanProsite:PS00771	ScanProsite:PS00772	PFscan:PS51174
PANTHER:PTHR22595	PANTHER:PTHR22595:SF71	InterPro:RlpA-like_sf	SUPFAM:SSF50685	SignalP:SignalP-noTM	UniParc:UPI0004EB4715

Description

BnaC03g33890DBnaC03g33890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV79]

Coordinates

chrLK032477:-:65757..66781

Molecular Weight (calculated)

15618.3 Da

IEP (calculated)

7.961

GRAVY (calculated)

-0.349

Length

141 amino acids

Sequence
(BLAST)

001: MSRLSICLLV LLCAFAAKTA AQSANNVRAT YHFYNPAQNG WDLYRVSAYC STWDGNQPLE WRQRYGWTAF CGPAGPRGRD SCGRCLRVTN TGTQAQATVR
101: IVDQCSNGGL DLDEAVFKQI DTDGQGYARG NLNVNYEFVN C

Best Arabidopsis Sequence Match ( AT3G04720.1 )
(BLAST)

001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV

Arabidopsis Description

HELHevein-like preproprotein [Source:UniProtKB/Swiss-Prot;Acc:P43082]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.