Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10470.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT4G10470.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT4G10470.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT4G10470.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY44971 | Canola | nucleus | 87.53 | 83.11 |
| AT1G33050.4 | Thale cress | nucleus | 70.96 | 50.07 |
| AT4G10470.1 | Thale cress | plastid | 33.54 | 42.27 |
Protein Annotations
| EnsemblPlants:CDX84053 | EnsemblPlantsGene:GSBRNA2T00139915001 | PANTHER:PTHR34361 | PANTHER:PTHR34361:SF2 | ProteinID:CDX84053 | ProteinID:CDX84053.1 |
| SEG:seg | UniParc:UPI0004EDDD8B | MapMan:35.2 | : | : | : |
Description
BnaC08g07300D
Coordinates
chrLK031835:+:395609..398193
Molecular Weight (calculated)
53023.6 Da
IEP (calculated)
4.826
GRAVY (calculated)
-0.487
Length
489 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQCSLGIDG LRSSLSPSSI DSSSLTLSAS KSEHEDSIFR DYTLDLSFLS SDDSLSRDVD TTTKALLNPN PLVSKLPEML IVSSTVAGDG ELELSCANAT
101: ENSSTDSEED TPCWIGINSR ETLASGGAIC RRSTDDLSGF RRLNPLAPQF IPSNSIKILE KDEKNGEFNL DDAASILADE SLGFVSQDSV SRNEFQQSKR
201: LDPLAPVFLP SNAKLTPSVH EAFETNAHST SALTYSDNKS LGKVKIDTPS GEAGRIHISG SSSNKSRGQR RLNPLAPQFS LSVTKPKAYS YEKYQAVDGT
301: GSSSRNAKAL SGGSSPKMDV MKLLTTIHGL SELLTLAHGS ESSDSPEELD LINSTVQNLN MYIQNGIQEQ SVVQHNSYDL QLLSNKSKLS IRDLQLPSTN
401: NMTVDLGVTR KEKYSVVSGE TFPDSGLYQY GVTKDEGFGQ VVAKSGYQQN HQGEEQINPH ALFYKSLWLK AEADRCLMVY ETSLSNPGS
101: ENSSTDSEED TPCWIGINSR ETLASGGAIC RRSTDDLSGF RRLNPLAPQF IPSNSIKILE KDEKNGEFNL DDAASILADE SLGFVSQDSV SRNEFQQSKR
201: LDPLAPVFLP SNAKLTPSVH EAFETNAHST SALTYSDNKS LGKVKIDTPS GEAGRIHISG SSSNKSRGQR RLNPLAPQFS LSVTKPKAYS YEKYQAVDGT
301: GSSSRNAKAL SGGSSPKMDV MKLLTTIHGL SELLTLAHGS ESSDSPEELD LINSTVQNLN MYIQNGIQEQ SVVQHNSYDL QLLSNKSKLS IRDLQLPSTN
401: NMTVDLGVTR KEKYSVVSGE TFPDSGLYQY GVTKDEGFGQ VVAKSGYQQN HQGEEQINPH ALFYKSLWLK AEADRCLMVY ETSLSNPGS
001: MKHYSHGIDG LRSGLSPSAK PFAIGSSSSP AFSLKSEHED SIWGDYTLDL SFLSSDDQRS GLDDDDSLSN LSRDVETNKE GLVLEEKIAS SGKVLVNPNP
101: SFSKLPEVLM KSSDVVGDAK LGLSCVSEKS STESDLDESE EDSPCWKGML SHKSLASGTK SMTSRRSTDD LSGFRKLNPL APQFIPSSSK KKLETDGEKC
201: EETSSSSLKK SLSSTFPSSS GEFDLTDPPL EDGRNDAAEK TSILTHNADE ILGFVTSDSV SKTVSMLDSR NEFQPSKRLD PLAPVFVPSS AKLGPSVHEK
301: LGDFVVNAYS TSALASSHVK SLDKGKVVTS SGEVGHSFKS QYGGHDFGST SSYGPWIESE VGITEYAKLG SSNKSQGQRR LNPLARQFSL ADAKQKPYGY
401: GKNQAADDLS LVVNTSGLYI PARYREDHNV VDADLAQSSV NVERFLPNMS HGGSSLITPK ADSNFGSTKW IAVEPNPTFS VKGNRDFKHH LPFHVVETAA
501: SSSTSDMKAL PGPSPKMDVK KLLTTMHGLS ELLTLAHGSE SSDSPNAEEL DLINSTVQNL NLYIQNNSQE HAGNQSVAQY NSYDLKLLPN KSKLSIRDHQ
601: FPTANNMTVD LDVKRKDKYS VVSRETVPGS RSYQYGATED NGFGQVVPTN GYQQHQGVEQ INQNALFYKS LWLKAEADRC LMVYETSLSN PYP
101: SFSKLPEVLM KSSDVVGDAK LGLSCVSEKS STESDLDESE EDSPCWKGML SHKSLASGTK SMTSRRSTDD LSGFRKLNPL APQFIPSSSK KKLETDGEKC
201: EETSSSSLKK SLSSTFPSSS GEFDLTDPPL EDGRNDAAEK TSILTHNADE ILGFVTSDSV SKTVSMLDSR NEFQPSKRLD PLAPVFVPSS AKLGPSVHEK
301: LGDFVVNAYS TSALASSHVK SLDKGKVVTS SGEVGHSFKS QYGGHDFGST SSYGPWIESE VGITEYAKLG SSNKSQGQRR LNPLARQFSL ADAKQKPYGY
401: GKNQAADDLS LVVNTSGLYI PARYREDHNV VDADLAQSSV NVERFLPNMS HGGSSLITPK ADSNFGSTKW IAVEPNPTFS VKGNRDFKHH LPFHVVETAA
501: SSSTSDMKAL PGPSPKMDVK KLLTTMHGLS ELLTLAHGSE SSDSPNAEEL DLINSTVQNL NLYIQNNSQE HAGNQSVAQY NSYDLKLLPN KSKLSIRDHQ
601: FPTANNMTVD LDVKRKDKYS VVSRETVPGS RSYQYGATED NGFGQVVPTN GYQQHQGVEQ INQNALFYKS LWLKAEADRC LMVYETSLSN PYP
Arabidopsis Description
Uncharacterized protein At1g33050 [Source:UniProtKB/TrEMBL;Acc:Q8VYZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.