Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84053 | Canola | nucleus | 42.27 | 33.54 |
| Bra035480.1-P | Field mustard | nucleus | 39.69 | 29.84 |
| CDY44971 | Canola | nucleus | 39.18 | 29.51 |
| AT1G33050.4 | Thale cress | nucleus | 47.68 | 26.7 |
Protein Annotations
| MapMan:35.2 | EntrezGene:826639 | UniProt:A0A178UXQ8 | ProteinID:AEE82887.1 | EMBL:AF428453 | ProteinID:ANM66674.1 |
| ArrayExpress:AT4G10470 | EnsemblPlantsGene:AT4G10470 | RefSeq:AT4G10470 | TAIR:AT4G10470 | RefSeq:AT4G10470-TAIR-G | EnsemblPlants:AT4G10470.1 |
| TAIR:AT4G10470.1 | Unigene:At.48841 | EMBL:BT015866 | GO:GO:0008150 | RefSeq:NP_001328556.1 | RefSeq:NP_567357.1 |
| ProteinID:OAO97451.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR34361 | PANTHER:PTHR34361:SF2 | UniProt:Q944H1 | UniParc:UPI00000A9F9F | SEG:seg |
Description
AT4g10470/F7L13_50 [Source:UniProtKB/TrEMBL;Acc:Q944H1]
Coordinates
chr4:+:6475984..6477883
Molecular Weight (calculated)
43114.2 Da
IEP (calculated)
6.717
GRAVY (calculated)
-0.599
Length
388 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQCDRSSLS PFPISSSSLS SSFVASESDP EDSLWSDFTF DFSFLTSEDH KISPNDDNDA TTVPKGKELN PLAPQFLPFN AKKNLNKNGR EIEVNSSNQN
101: TRIGVLIHDA DESLGLVSQD SVSNTMSMLD ISNEFQKSKK LDPLAPVFVP ACAKLSEKHG AADHMLTMET NVGSTSGVSS SDSMLLNTFK VVGTHSLVVD
201: RSLRNRYSNT RLDRSSNKSH GRKKLNPLAP RFSLADHKQN VYGCEVNQAA NDFGDRHGCS TSSPSQKVDV KKLLTTIHGL SELLTHVHSS ETSDLPNEQY
301: LDLINCTVQN LNSYINNRVQ EHSGDYASAV HSSCDLYSLP NMRKVIRNHH QTEEQINPEV CFYKSLWLKA KAERSLMEHE TFLSKARS
101: TRIGVLIHDA DESLGLVSQD SVSNTMSMLD ISNEFQKSKK LDPLAPVFVP ACAKLSEKHG AADHMLTMET NVGSTSGVSS SDSMLLNTFK VVGTHSLVVD
201: RSLRNRYSNT RLDRSSNKSH GRKKLNPLAP RFSLADHKQN VYGCEVNQAA NDFGDRHGCS TSSPSQKVDV KKLLTTIHGL SELLTHVHSS ETSDLPNEQY
301: LDLINCTVQN LNSYINNRVQ EHSGDYASAV HSSCDLYSLP NMRKVIRNHH QTEEQINPEV CFYKSLWLKA KAERSLMEHE TFLSKARS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.