Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G10470.1 | CDX85250 | AT3G29160.1 | 21798944 |
| AT4G10470.1 | CDX86386 | AT3G29160.1 | 21798944 |
| AT4G10470.1 | CDY04058 | AT3G29160.1 | 21798944 |
| AT4G10470.1 | CDY44405 | AT3G29160.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035480.1-P | Field mustard | nucleus | 97.48 | 97.29 |
| CDX84053 | Canola | nucleus | 83.11 | 87.53 |
| AT1G33050.4 | Thale cress | nucleus | 69.32 | 51.52 |
| AT4G10470.1 | Thale cress | plastid | 29.51 | 39.18 |
Protein Annotations
| EnsemblPlants:CDY44971 | EnsemblPlantsGene:GSBRNA2T00081157001 | PANTHER:PTHR34361 | PANTHER:PTHR34361:SF2 | ProteinID:CDY44971 | ProteinID:CDY44971.1 |
| SEG:seg | UniParc:UPI0004EDC141 | UniProt:A0A078I517 | MapMan:35.2 | : | : |
Description
BnaA08g06710DBnaA08g06710D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I517]
Coordinates
chrLK032607:+:213623..216036
Molecular Weight (calculated)
55906.8 Da
IEP (calculated)
5.041
GRAVY (calculated)
-0.529
Length
515 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQCSLGIDG LRSSLSASKS EHEDSIFRDY TLDLSFLSSD DSLSRDVDTT TKALLNPNPL VSKLPEMLIV SSTVAGDGEL ELSCANAAEH SSTDSEEDTP
101: CWIGINSRET PASAGAICRR STDDDLSGFR RLNPLAPQFI PSNSIKVLEK DGLKKSLSSD FPSSSAEFNL DDAASILADE SLGFVSQDGN EFQQSKRLDP
201: SAPVFVPSNA KLTPSAFETN AHSTTYSDNK LLGKVKIDTP SREAAPIHIS GSYNKSRGQR RLNPLAPQFS LPDTKPKAYS YGSSSFKSPT ADTNFGSTKW
301: YAVEPNTTLS VNGNQDFPFH VVETAAGSSS RNAKASSGGS SPKMDVMKLL TTIHGLSELL TLAHGSESSD SPEELHLINS TVQNLNMYIQ NGIQERSVVQ
401: HNSYDLQLLS NKSKLSIRDL QLPSTNNMTV DLGVRRKEKY SVVSGETFPD SGLYQYGVTK DEGFGQVGAK SGYQQNHQGE EQINPQSLFY KSLWLKAEAE
501: RCLMVYETSL SNPGS
101: CWIGINSRET PASAGAICRR STDDDLSGFR RLNPLAPQFI PSNSIKVLEK DGLKKSLSSD FPSSSAEFNL DDAASILADE SLGFVSQDGN EFQQSKRLDP
201: SAPVFVPSNA KLTPSAFETN AHSTTYSDNK LLGKVKIDTP SREAAPIHIS GSYNKSRGQR RLNPLAPQFS LPDTKPKAYS YGSSSFKSPT ADTNFGSTKW
301: YAVEPNTTLS VNGNQDFPFH VVETAAGSSS RNAKASSGGS SPKMDVMKLL TTIHGLSELL TLAHGSESSD SPEELHLINS TVQNLNMYIQ NGIQERSVVQ
401: HNSYDLQLLS NKSKLSIRDL QLPSTNNMTV DLGVRRKEKY SVVSGETFPD SGLYQYGVTK DEGFGQVGAK SGYQQNHQGE EQINPQSLFY KSLWLKAEAE
501: RCLMVYETSL SNPGS
001: MKHYSHGIDG LRSGLSPSAK PFAIGSSSSP AFSLKSEHED SIWGDYTLDL SFLSSDDQRS GLDDDDSLSN LSRDVETNKE GLVLEEKIAS SGKVLVNPNP
101: SFSKLPEVLM KSSDVVGDAK LGLSCVSEKS STESDLDESE EDSPCWKGML SHKSLASGTK SMTSRRSTDD LSGFRKLNPL APQFIPSSSK KKLETDGEKC
201: EETSSSSLKK SLSSTFPSSS GEFDLTDPPL EDGRNDAAEK TSILTHNADE ILGFVTSDSV SKTVSMLDSR NEFQPSKRLD PLAPVFVPSS AKLGPSVHEK
301: LGDFVVNAYS TSALASSHVK SLDKGKVVTS SGEVGHSFKS QYGGHDFGST SSYGPWIESE VGITEYAKLG SSNKSQGQRR LNPLARQFSL ADAKQKPYGY
401: GKNQAADDLS LVVNTSGLYI PARYREDHNV VDADLAQSSV NVERFLPNMS HGGSSLITPK ADSNFGSTKW IAVEPNPTFS VKGNRDFKHH LPFHVVETAA
501: SSSTSDMKAL PGPSPKMDVK KLLTTMHGLS ELLTLAHGSE SSDSPNAEEL DLINSTVQNL NLYIQNNSQE HAGNQSVAQY NSYDLKLLPN KSKLSIRDHQ
601: FPTANNMTVD LDVKRKDKYS VVSRETVPGS RSYQYGATED NGFGQVVPTN GYQQHQGVEQ INQNALFYKS LWLKAEADRC LMVYETSLSN PYP
101: SFSKLPEVLM KSSDVVGDAK LGLSCVSEKS STESDLDESE EDSPCWKGML SHKSLASGTK SMTSRRSTDD LSGFRKLNPL APQFIPSSSK KKLETDGEKC
201: EETSSSSLKK SLSSTFPSSS GEFDLTDPPL EDGRNDAAEK TSILTHNADE ILGFVTSDSV SKTVSMLDSR NEFQPSKRLD PLAPVFVPSS AKLGPSVHEK
301: LGDFVVNAYS TSALASSHVK SLDKGKVVTS SGEVGHSFKS QYGGHDFGST SSYGPWIESE VGITEYAKLG SSNKSQGQRR LNPLARQFSL ADAKQKPYGY
401: GKNQAADDLS LVVNTSGLYI PARYREDHNV VDADLAQSSV NVERFLPNMS HGGSSLITPK ADSNFGSTKW IAVEPNPTFS VKGNRDFKHH LPFHVVETAA
501: SSSTSDMKAL PGPSPKMDVK KLLTTMHGLS ELLTLAHGSE SSDSPNAEEL DLINSTVQNL NLYIQNNSQE HAGNQSVAQY NSYDLKLLPN KSKLSIRDHQ
601: FPTANNMTVD LDVKRKDKYS VVSRETVPGS RSYQYGATED NGFGQVVPTN GYQQHQGVEQ INQNALFYKS LWLKAEADRC LMVYETSLSN PYP
Arabidopsis Description
Uncharacterized protein At1g33050 [Source:UniProtKB/TrEMBL;Acc:Q8VYZ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.