Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029841.1-P | Field mustard | cytosol | 43.97 | 50.49 |
| CDY21396 | Canola | cytosol | 56.9 | 8.68 |
| CDX96321 | Canola | cytosol | 63.79 | 8.44 |
| CDY03692 | Canola | cytosol | 64.66 | 8.37 |
| CDY37942 | Canola | cytosol | 64.66 | 8.33 |
| CDX72804 | Canola | cytosol | 62.93 | 8.29 |
| CDY04777 | Canola | cytosol | 56.03 | 7.28 |
| Os01t0616100-01 | Rice | cytosol, plasma membrane | 43.97 | 6.94 |
| GSMUA_Achr3P25170_001 | Banana | cytosol | 44.83 | 5.63 |
| EES01072 | Sorghum | cytosol | 44.83 | 5.42 |
| Zm00001d044478_P022 | Maize | cytosol | 44.83 | 5.41 |
| TraesCS3A01G221700.2 | Wheat | cytosol | 43.97 | 5.27 |
| TraesCS3B01G251500.3 | Wheat | cytosol | 43.97 | 5.27 |
| TraesCS3D01G231400.1 | Wheat | cytosol | 43.97 | 5.27 |
| Zm00001d011351_P002 | Maize | cytosol | 44.83 | 5.05 |
| HORVU3Hr1G054200.1 | Barley | plastid | 43.97 | 4.78 |
| CDY06969 | Canola | cytosol | 14.66 | 2.14 |
| CDX93162 | Canola | cytosol | 14.66 | 2.14 |
| CDY35443 | Canola | cytosol | 14.66 | 2.13 |
| CDY22472 | Canola | cytosol | 14.66 | 2.13 |
| CDY04778 | Canola | cytosol | 0.86 | 0.1 |
| CDY23884 | Canola | cytosol, extracellular, plastid | 0.0 | 0.0 |
| CDY23885 | Canola | cytosol | 0.0 | 0.0 |
| CDY00941 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY00940 | EnsemblPlantsGene:GSBRNA2T00110947001 | ProteinID:CDY00940 | ProteinID:CDY00940.1 | UniParc:UPI0004EF452C | MapMan:35.2 |
Description
BnaC05g42600D
Coordinates
chrLK031923:-:220693..221545
Molecular Weight (calculated)
13020.4 Da
IEP (calculated)
5.159
GRAVY (calculated)
-0.277
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLTIAQSQD RNDFELTTLP ALVPLLSTES FESFHIDVRL ASLCFRIPTD SEHLVSHVLP LLLRAYNDND VRIQEEVLKR STSVAKQLDG QVVKIHNRDH
101: SGGKDSEASK EEGTCV
101: SGGKDSEASK EEGTCV
001: MSINMKTFTQ ALARTAAVIE KTVHTTVQEV TGPKALQDYE LLDQIGSAGP GLAWKLYAAK ARDSTRPQQY PTVCVWMLDK RALSEARVRA NLSKAAEDAF
101: LDLIRADAGK LVRLRHPGVV HVVQALDENK NAMALVTEPL FASVANALGN VENVGNVPKD LKSMEMSLLE VKHGLLQISE TLNFLHNNAN LIHRAISPEN
201: VLITSAGSWK LAGFGFAISA AQAGNLDNMQ SFHYSEYDVE DSILPVQPSL NYTAPELMRS KSPSAGASSD IFSFGCLAYH LVARKPLFDC NNNVKMYMNT
301: LNYITNESFS SIPSELVSDL QRMLSTNESF RPTALDFTGS NFFRSDARLR ALRFLDHLLE RDNMQKSEFL KALSDMWKDF DSRVLRYKVL PPLCAELRNL
401: VLQPIILPMV LTIAQSQDRT DFELITLPAL VPVLSTASGD TLLLLVKHAD LITNKTDSEH LVSHVLPLLL RAYNDNDVRI QEEVLKRSTS VAKQLDGQVV
501: RQAILPRVHG LALKTTVAAV RVNALLCLAE LVQTLDKPAA IEILETIQRC TAVDRSAPTL MCTLAVANAI LKQYGVEFTA EHVLTLMMPL LTAQQLNVQQ
601: FAKYMLFVKD ILRKIEEKRG VTVNDSGVPE VKPHSAANGL QFQSSTQIPE KVASAAKSSP AWDEDWGSPS KDSAVGNPAS SRHNTNDQFN KSTDQSQPSI
701: MSTLPNKTTA PTTCPAVDIE WPPRQSSSLT APATDNQTQL NTGTSFASGF DELDPFANWP PRPNNGASVA STGLKNGAAS NFSNNLPGGT HFQTANNDNW
801: AFSSASLSSL KPPQQGNQGI SANNQDPLNS FGVPKQSQGM PSFTSGSYNN QKPADISSIF GSSKTEPSAM KLAPPPSIAM GRGRGRGRGG TGTSTSKPSG
901: SQPSLLDLL
101: LDLIRADAGK LVRLRHPGVV HVVQALDENK NAMALVTEPL FASVANALGN VENVGNVPKD LKSMEMSLLE VKHGLLQISE TLNFLHNNAN LIHRAISPEN
201: VLITSAGSWK LAGFGFAISA AQAGNLDNMQ SFHYSEYDVE DSILPVQPSL NYTAPELMRS KSPSAGASSD IFSFGCLAYH LVARKPLFDC NNNVKMYMNT
301: LNYITNESFS SIPSELVSDL QRMLSTNESF RPTALDFTGS NFFRSDARLR ALRFLDHLLE RDNMQKSEFL KALSDMWKDF DSRVLRYKVL PPLCAELRNL
401: VLQPIILPMV LTIAQSQDRT DFELITLPAL VPVLSTASGD TLLLLVKHAD LITNKTDSEH LVSHVLPLLL RAYNDNDVRI QEEVLKRSTS VAKQLDGQVV
501: RQAILPRVHG LALKTTVAAV RVNALLCLAE LVQTLDKPAA IEILETIQRC TAVDRSAPTL MCTLAVANAI LKQYGVEFTA EHVLTLMMPL LTAQQLNVQQ
601: FAKYMLFVKD ILRKIEEKRG VTVNDSGVPE VKPHSAANGL QFQSSTQIPE KVASAAKSSP AWDEDWGSPS KDSAVGNPAS SRHNTNDQFN KSTDQSQPSI
701: MSTLPNKTTA PTTCPAVDIE WPPRQSSSLT APATDNQTQL NTGTSFASGF DELDPFANWP PRPNNGASVA STGLKNGAAS NFSNNLPGGT HFQTANNDNW
801: AFSSASLSSL KPPQQGNQGI SANNQDPLNS FGVPKQSQGM PSFTSGSYNN QKPADISSIF GSSKTEPSAM KLAPPPSIAM GRGRGRGRGG TGTSTSKPSG
901: SQPSLLDLL
Arabidopsis Description
ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9C9H8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.