Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400030435 | Potato | plastid | 1.52 | 6.02 |
| PGSC0003DMT400042962 | Potato | plastid | 1.52 | 5.88 |
| KRH34211 | Soybean | cytosol | 1.62 | 5.13 |
| CDY35443 | Canola | cytosol | 2.13 | 2.63 |
| KRH40335 | Soybean | cytosol | 2.03 | 2.52 |
| CDX93162 | Canola | cytosol | 2.03 | 2.52 |
| CDY22472 | Canola | cytosol | 2.03 | 2.51 |
| KRH00899 | Soybean | cytosol | 1.93 | 2.41 |
| KRG92577 | Soybean | cytosol | 1.93 | 2.4 |
| CDY21396 | Canola | cytosol | 1.83 | 2.37 |
| EES03802 | Sorghum | cytosol | 1.83 | 2.18 |
| Solyc05g052200.2.1 | Tomato | nucleus | 1.72 | 2.08 |
| Solyc06g048890.2.1 | Tomato | cytosol | 1.72 | 2.06 |
| TraesCS3B01G375000.1 | Wheat | cytosol | 1.72 | 2.06 |
| TraesCS3D01G336800.1 | Wheat | cytosol | 1.72 | 2.06 |
| CDX96321 | Canola | cytosol | 1.83 | 2.05 |
| CDX72804 | Canola | cytosol | 1.83 | 2.04 |
| CDY06969 | Canola | cytosol | 1.62 | 2.02 |
| CDY04777 | Canola | cytosol | 1.83 | 2.02 |
| HORVU3Hr1G080820.2 | Barley | cytosol, plastid | 1.83 | 1.96 |
| TraesCS3A01G342800.1 | Wheat | cytosol | 1.83 | 1.95 |
| Os01t0819900-01 | Rice | cytosol, plasma membrane | 1.62 | 1.94 |
| CDY03692 | Canola | cytosol | 1.72 | 1.9 |
| CDY37942 | Canola | cytosol | 1.72 | 1.89 |
| CDY00940 | Canola | cytosol | 0.1 | 0.86 |
| Zm00001d014830_P001 | Maize | cytosol, peroxisome, plasma membrane | 0.1 | 0.39 |
| Zm00001d004670_P001 | Maize | cytosol | 0.1 | 0.32 |
| KRG88859 | Soybean | cytosol, peroxisome, plastid | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion, nucleus, plastid | 0.0 | 0.0 |
| PGSC0003DMT400022642 | Potato | cytosol | 0.0 | 0.0 |
| CDY23885 | Canola | cytosol | 0.0 | 0.0 |
| CDY23884 | Canola | cytosol, extracellular, plastid | 0.0 | 0.0 |
| CDY00941 | Canola | extracellular | 0.0 | 0.0 |
Protein Annotations
| MapMan:22.6.5.7 | GO:A0A078EYP7 | EnsemblPlants:CDY04778 | ProteinID:CDY04778 | ProteinID:CDY04778.1 | InterPro:CNH_dom |
| InterPro:Clathrin_H-chain/VPS_repeat | GO:GO:0006810 | GO:GO:0006886 | GO:GO:0008150 | GO:GO:0016192 | EnsemblPlantsGene:GSBRNA2T00119465001 |
| InterPro:IPR000547 | InterPro:IPR001180 | PFAM:PF00637 | PFAM:PF00780 | PFAM:PF10366 | PFAM:PF10367 |
| PFscan:PS50219 | PANTHER:PTHR12894 | PANTHER:PTHR12894:SF10 | InterPro:Quinoprotein_ADH-like_supfam | SUPFAM:SSF50998 | UniParc:UPI0004EE4757 |
| InterPro:VPS39/TGF_beta_rcpt-assoc_1 | InterPro:VPS39/TGF_beta_rcpt-assoc_2 | InterPro:Vam6/VPS39/TRAP1 | SEG:seg | : | : |
Description
BnaC05g18110D
Coordinates
chrLK031957:-:660601..666132
Molecular Weight (calculated)
110187.0 Da
IEP (calculated)
5.066
GRAVY (calculated)
-0.135
Length
986 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKSRSVVEL TTRYDLGGVD KIRSLCLSPH SDSQTLVYLG TFSGSLLLLS LDTSTNIVAR LGTVSLSASP VESIFVLGQE RGKVLALCNG YLFLVDSLLS
101: RPAKRLGGVL KGINVVARRV RGRESSSSTD LLLLPSEVSA ESSSSKKFLQ MIGGGSRVSD VKGKDLRREG VHQGRYVFAV AISERMLLIE LQCDEEDGKG
201: DSFVVLKEIV GIVGVKTMVW LDDYVVAGTD KGYSLISCVT GQSGVIFTLP DVSGPPLLKL LCKEWKVLLL VDNVGVVVDT NGQPVGGSLV FRRRPDSVGE
301: LSFYLVTVGD GKMEIHQKKS GACVQSVGFG PEGCGPSVLA VDEAGDGNLL AVTTMSKVIF YRRVPYEEQI KDLLRKKRYR EAISLVEELD SEGEISKEML
401: SFLHAQIGYL LLFDLRFEEA VNQFLKSESM EPSEVFPFIM RDPNRWSLQV PRNRYWGLHP PPAPLEDVVD NGLAAIQRAI FLRKAGMDTP VDEEFSSNPP
501: SIADLLESAI KNMTRYLEVS REKELSHPVR EGIDTLLMLL YRALNRVEDM ENLASSVNNC VVEELESLLN ESEHLRTLAF LYASKGMSAK ALAIWRLFAK
601: NYSSGLWQDS DDLVPYLHEN ELIRLSGKEA AAAEAARILE EPCDPELALQ HLSWISDINP LFAIQVLTSD KRTEELLPEK VIQAIDPQQV EIIQRYLQWL
701: IEDRDYNDPQ LHTSYALSLA KSALECVEVQ NGNQETDAGS REAHDCNVGS ISLFESDVRE RLQTFLQSSD LYNPEELLNL IEGSELWLEK AILYRRIGQE
801: TVVLQILALK LEDCAAAEQY CVEIGRPDAF MQLLDMYLDP QNGKEPMFKA AVRLLHNHGE SLDPLQVLEK LSPDMPLKLA SDTILRMLRA RVHHHRQGQI
901: VHNVSRALDV DSRLARLEER SRHVQINDES LCDSCFARLG TKLFAMYPDD TIVCYKCYRR LGESKSVTGR DFKRDVLIKP GWLVNR
101: RPAKRLGGVL KGINVVARRV RGRESSSSTD LLLLPSEVSA ESSSSKKFLQ MIGGGSRVSD VKGKDLRREG VHQGRYVFAV AISERMLLIE LQCDEEDGKG
201: DSFVVLKEIV GIVGVKTMVW LDDYVVAGTD KGYSLISCVT GQSGVIFTLP DVSGPPLLKL LCKEWKVLLL VDNVGVVVDT NGQPVGGSLV FRRRPDSVGE
301: LSFYLVTVGD GKMEIHQKKS GACVQSVGFG PEGCGPSVLA VDEAGDGNLL AVTTMSKVIF YRRVPYEEQI KDLLRKKRYR EAISLVEELD SEGEISKEML
401: SFLHAQIGYL LLFDLRFEEA VNQFLKSESM EPSEVFPFIM RDPNRWSLQV PRNRYWGLHP PPAPLEDVVD NGLAAIQRAI FLRKAGMDTP VDEEFSSNPP
501: SIADLLESAI KNMTRYLEVS REKELSHPVR EGIDTLLMLL YRALNRVEDM ENLASSVNNC VVEELESLLN ESEHLRTLAF LYASKGMSAK ALAIWRLFAK
601: NYSSGLWQDS DDLVPYLHEN ELIRLSGKEA AAAEAARILE EPCDPELALQ HLSWISDINP LFAIQVLTSD KRTEELLPEK VIQAIDPQQV EIIQRYLQWL
701: IEDRDYNDPQ LHTSYALSLA KSALECVEVQ NGNQETDAGS REAHDCNVGS ISLFESDVRE RLQTFLQSSD LYNPEELLNL IEGSELWLEK AILYRRIGQE
801: TVVLQILALK LEDCAAAEQY CVEIGRPDAF MQLLDMYLDP QNGKEPMFKA AVRLLHNHGE SLDPLQVLEK LSPDMPLKLA SDTILRMLRA RVHHHRQGQI
901: VHNVSRALDV DSRLARLEER SRHVQINDES LCDSCFARLG TKLFAMYPDD TIVCYKCYRR LGESKSVTGR DFKRDVLIKP GWLVNR
001: MSKSRAVVEL TARFDLGGDD KIRALSLSPI SDSQTLVYLG TYSGSLILLS LDTLTNTVSR LASVSLSPSP VESIFVLGEE RGRVLALCNG YLFLLDSLLS
101: QPAKRLGGLL KGINVIAKRV RGRDSSSTDL LPSEISTDSS SSKKFLQLLG AGNLVSDVRG NDSRHERVQQ GHYVFAVAIG ERMLLIELQC AEKEGLSGSF
201: VVLKEILGIG GIKTLVWLDD YVIAGTVKGY SLISCVTGLS GVIFTLPDVS GPPLLKLLCK EWKVLLLVDN VGVVVDTNGQ PIGGSLVFRR RPDSVGELSF
301: YLVTVGDGKM EIHQKKSGAC VQSVSFGPQG CGPSLLAADE AGDGNLLVVT TLSKLIFYRR VPYEEQIKDL LRKKRYRETI SLVEELDSQG EISKDMLSFL
401: HAQIGYLLLF DLRFEEAVNQ FLKSEKMEPS EVFPFIMRDP NRWSLVVPRN RYWGLHPPPA PFEDVVDNGL MAIQRANFLR KAGMDTPVDE EFFSDPPSRA
501: DLLDSAIKNI TRYLEISREK GLTLPVREGI DTLLMLLYRA LNRVEDMENL ASSGNNCVVE ELETLLTESG HLRTLAFLYA TKGMGAKALA IWRLFTKNYS
601: SGLWQDSDDL VPYLHDNELI RLSGKEAAAA EAARILEEPC DPELALQHLS WIADVNPLFA IQVLTSDKRT EELSPEQVIQ AIDPKKVEII QRYFQWLIEE
701: RDYTDPQLHT SYALSLARSA LECVEVQNGI QEADVPNGSE AHDSNVGSIS LFEVDVRERL QAFLQSSDLY DPEEILELVE GSELWLEKAI LYRRIGKETL
801: VLQILALKLE DCAAAEQYCV EIGRPDAFMQ LLDMYLDPQN GKEPMFKAAV RLLHNHGESL DPLQVLDKLS PDMPLKLASD TILRMLRARV HHHRQGQIVH
901: NISRALDVDS RLARLEERSR HMQINDESLC DSCYARLGTK LFAMYPDDTI VCYKCYRRLG ESKSVTGRDF KRDVLIKPGW LVNR
101: QPAKRLGGLL KGINVIAKRV RGRDSSSTDL LPSEISTDSS SSKKFLQLLG AGNLVSDVRG NDSRHERVQQ GHYVFAVAIG ERMLLIELQC AEKEGLSGSF
201: VVLKEILGIG GIKTLVWLDD YVIAGTVKGY SLISCVTGLS GVIFTLPDVS GPPLLKLLCK EWKVLLLVDN VGVVVDTNGQ PIGGSLVFRR RPDSVGELSF
301: YLVTVGDGKM EIHQKKSGAC VQSVSFGPQG CGPSLLAADE AGDGNLLVVT TLSKLIFYRR VPYEEQIKDL LRKKRYRETI SLVEELDSQG EISKDMLSFL
401: HAQIGYLLLF DLRFEEAVNQ FLKSEKMEPS EVFPFIMRDP NRWSLVVPRN RYWGLHPPPA PFEDVVDNGL MAIQRANFLR KAGMDTPVDE EFFSDPPSRA
501: DLLDSAIKNI TRYLEISREK GLTLPVREGI DTLLMLLYRA LNRVEDMENL ASSGNNCVVE ELETLLTESG HLRTLAFLYA TKGMGAKALA IWRLFTKNYS
601: SGLWQDSDDL VPYLHDNELI RLSGKEAAAA EAARILEEPC DPELALQHLS WIADVNPLFA IQVLTSDKRT EELSPEQVIQ AIDPKKVEII QRYFQWLIEE
701: RDYTDPQLHT SYALSLARSA LECVEVQNGI QEADVPNGSE AHDSNVGSIS LFEVDVRERL QAFLQSSDLY DPEEILELVE GSELWLEKAI LYRRIGKETL
801: VLQILALKLE DCAAAEQYCV EIGRPDAFMQ LLDMYLDPQN GKEPMFKAAV RLLHNHGESL DPLQVLDKLS PDMPLKLASD TILRMLRARV HHHRQGQIVH
901: NISRALDVDS RLARLEERSR HMQINDESLC DSCYARLGTK LFAMYPDDTI VCYKCYRRLG ESKSVTGRDF KRDVLIKPGW LVNR
Arabidopsis Description
VPS3Vacuolar sorting protein 39 [Source:TAIR;Acc:AT1G22860]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.