Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 2
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040039.1-P | Field mustard | extracellular | 100.0 | 100.0 |
| CDY35973 | Canola | extracellular | 89.04 | 89.04 |
| CDY28008 | Canola | extracellular | 86.3 | 86.3 |
| CDX74023 | Canola | cytosol, plasma membrane | 79.45 | 81.69 |
| CDY07966 | Canola | cytosol, plasma membrane | 79.45 | 81.69 |
| KRG99058 | Soybean | cytosol, extracellular, mitochondrion | 54.79 | 81.63 |
| GSMUA_Achr11P... | Banana | cytosol | 80.82 | 79.73 |
| PGSC0003DMT400080257 | Potato | cytosol, extracellular, golgi | 80.82 | 79.73 |
| Solyc12g099710.1.1 | Tomato | extracellular | 80.82 | 79.73 |
| TraesCS1A01G167200.1 | Wheat | cytosol, extracellular, mitochondrion, plasma membrane | 80.82 | 78.67 |
| TraesCS1B01G183600.1 | Wheat | cytosol, extracellular, plasma membrane | 80.82 | 78.67 |
| TraesCS1D01G173700.1 | Wheat | cytosol, extracellular, mitochondrion, plasma membrane | 80.82 | 78.67 |
| KRH45939 | Soybean | cytosol, extracellular, plastid | 79.45 | 78.38 |
| VIT_06s0009g03590.t01 | Wine grape | cytosol, extracellular, golgi | 79.45 | 78.38 |
| AT3G07910.1 | Thale cress | extracellular | 76.71 | 75.68 |
| EES11552 | Sorghum | extracellular, golgi, plastid | 76.71 | 74.67 |
| KRH62867 | Soybean | extracellular | 67.12 | 69.01 |
| EER91445 | Sorghum | extracellular | 56.16 | 53.25 |
| Zm00001d026463_P002 | Maize | mitochondrion | 54.79 | 43.48 |
Protein Annotations
| EnsemblPlants:CDY22143 | EnsemblPlantsGene:GSBRNA2T00018536001 | GO:A0A078GBT2 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Romo1/Mgr2 | PANTHER:PTHR28525 | PANTHER:PTHR28525:SF3 | PFAM:PF10247 | ProteinID:CDY22143 | ProteinID:CDY22143.1 |
| SEG:seg | SMART:SM01378 | TMHMM:TMhelix | UniParc:UPI0002544750 | UniProt:A0A078GBT2 | MapMan:35.2 |
Description
BnaC01g39580DBnaC01g39580D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBT2]
Coordinates
chrLK032128:-:103263..104245
Molecular Weight (calculated)
7232.0 Da
IEP (calculated)
10.450
GRAVY (calculated)
0.682
Length
73 amino acids
Sequence
(BLAST)
(BLAST)
1: MARETSCLSR IAAGTAIGGA LGGAVGAVHG TYQAIRLGVP GLMKIRYIGQ TTIGSAAIFG LFLGAGSLIH CGK
1: MAKNSCLAKI TAGVAVGGAL GGAVGAVYGT YEAIRVKVPG LHKVRFIGQT TLSSAAIFGL FLGAGSLIHC GKGY
Arabidopsis Description
AT3g07910/F17A17_25 [Source:UniProtKB/TrEMBL;Acc:Q9SFC3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.