Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G173700.1 | Wheat | cytosol, extracellular, mitochondrion, plasma membrane | 100.0 | 100.0 |
| TraesCS1B01G183600.1 | Wheat | cytosol, extracellular, plasma membrane | 98.67 | 98.67 |
| GSMUA_Achr11P... | Banana | cytosol | 86.67 | 87.84 |
| VIT_06s0009g03590.t01 | Wine grape | cytosol, extracellular, golgi | 85.33 | 86.49 |
| KRG99058 | Soybean | cytosol, extracellular, mitochondrion | 56.0 | 85.71 |
| PGSC0003DMT400080257 | Potato | cytosol, extracellular, golgi | 84.0 | 85.14 |
| KRH45939 | Soybean | cytosol, extracellular, plastid | 82.67 | 83.78 |
| CDY35973 | Canola | extracellular | 81.33 | 83.56 |
| EES11552 | Sorghum | extracellular, golgi, plastid | 82.67 | 82.67 |
| Bra029687.1-P | Field mustard | cytosol, extracellular, nucleus | 80.0 | 82.19 |
| Solyc12g099710.1.1 | Tomato | extracellular | 80.0 | 81.08 |
| Bra040039.1-P | Field mustard | extracellular | 78.67 | 80.82 |
| CDY22143 | Canola | extracellular | 78.67 | 80.82 |
| CDY28008 | Canola | extracellular | 78.67 | 80.82 |
| Bra001276.1-P | Field mustard | cytosol, plasma membrane | 74.67 | 78.87 |
| CDY07966 | Canola | cytosol, plasma membrane | 74.67 | 78.87 |
| CDX74023 | Canola | cytosol, plasma membrane | 74.67 | 78.87 |
| AT3G07910.1 | Thale cress | extracellular | 76.0 | 77.03 |
| KRH62867 | Soybean | extracellular | 69.33 | 73.24 |
| EER91445 | Sorghum | extracellular | 62.67 | 61.04 |
| Zm00001d026463_P002 | Maize | mitochondrion | 53.33 | 43.48 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G167200.1 | EnsemblPlantsGene:TraesCS1A01G167200 | InterPro:Romo1/Mgr2 | PANTHER:PTHR28525 | PANTHER:PTHR28525:SF3 | PFAM:PF10247 |
| SEG:seg | SMART:SM01378 | TMHMM:TMhelix | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr1A:+:300100831..300102497
Molecular Weight (calculated)
7470.3 Da
IEP (calculated)
10.971
GRAVY (calculated)
0.692
Length
75 amino acids
Sequence
(BLAST)
(BLAST)
1: MARRDSCLAR IGAGVAIGGA VGGAVGAVYG TYAAIRLRVP GLLKIRHIGQ ATVGSAAVFG LFLGAGSLIH CGKNY
1: MAKNSCLAKI TAGVAVGGAL GGAVGAVYGT YEAIRVKVPG LHKVRFIGQT TLSSAAIFGL FLGAGSLIHC GKGY
Arabidopsis Description
AT3g07910/F17A17_25 [Source:UniProtKB/TrEMBL;Acc:Q9SFC3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.