Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 2
- vacuole 3
- plasma membrane 2
- golgi 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | cytosol | 95.95 | 95.95 |
| VIT_06s0009g03590.t01 | Wine grape | cytosol, extracellular, golgi | 94.59 | 94.59 |
| Solyc12g099710.1.1 | Tomato | extracellular | 94.59 | 94.59 |
| KRG99058 | Soybean | cytosol, extracellular, mitochondrion | 62.16 | 93.88 |
| KRH45939 | Soybean | cytosol, extracellular, plastid | 91.89 | 91.89 |
| Bra029687.1-P | Field mustard | cytosol, extracellular, nucleus | 89.19 | 90.41 |
| EES11552 | Sorghum | extracellular, golgi, plastid | 90.54 | 89.33 |
| CDY35973 | Canola | extracellular | 87.84 | 89.04 |
| Bra001276.1-P | Field mustard | cytosol, plasma membrane | 83.78 | 87.32 |
| CDY07966 | Canola | cytosol, plasma membrane | 83.78 | 87.32 |
| CDX74023 | Canola | cytosol, plasma membrane | 83.78 | 87.32 |
| CDY28008 | Canola | extracellular | 85.14 | 86.3 |
| TraesCS1A01G167200.1 | Wheat | cytosol, extracellular, mitochondrion, plasma membrane | 85.14 | 84.0 |
| TraesCS1B01G183600.1 | Wheat | cytosol, extracellular, plasma membrane | 85.14 | 84.0 |
| TraesCS1D01G173700.1 | Wheat | cytosol, extracellular, mitochondrion, plasma membrane | 85.14 | 84.0 |
| AT3G07910.1 | Thale cress | extracellular | 82.43 | 82.43 |
| CDY22143 | Canola | extracellular | 79.73 | 80.82 |
| Bra040039.1-P | Field mustard | extracellular | 79.73 | 80.82 |
| EER91445 | Sorghum | extracellular | 63.51 | 61.04 |
| Zm00001d026463_P002 | Maize | mitochondrion | 58.11 | 46.74 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400080257 | EnsemblPlantsGene:PGSC0003DMG400031241 | EntrezGene:102579057 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Romo1/Mgr2 | PANTHER:PTHR28525 | PANTHER:PTHR28525:SF3 | PFAM:PF10247 | PGSC:PGSC0003DMG400031241 | RefSeq:XP_006362315.1 |
| SEG:seg | SMART:SM01378 | TMHMM:TMhelix | UniParc:UPI000294C35F | UniProt:M1D379 | MapMan:35.2 |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400031241]
Coordinates
chr11:-:36515896..36522585
Molecular Weight (calculated)
7451.2 Da
IEP (calculated)
9.972
GRAVY (calculated)
0.700
Length
74 amino acids
Sequence
(BLAST)
(BLAST)
1: MARDSCLARV TAGVAIGGAV GGAVGAVYGT YEAVRFKVPG LLKIRYIGQT TLGSAAIFGL FLGAGSLIHC GKSY
1: MAKNSCLAKI TAGVAVGGAL GGAVGAVYGT YEAIRVKVPG LHKVRFIGQT TLSSAAIFGL FLGAGSLIHC GKGY
Arabidopsis Description
AT3g07910/F17A17_25 [Source:UniProtKB/TrEMBL;Acc:Q9SFC3]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.