CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66849	Canola	cytosol	83.39	87.17
CDY70026	Canola	cytosol	12.64	8.68
CDY53049	Canola	cytosol	20.94	7.13
CDY47220	Canola	cytosol	20.94	7.13
CDY35578	Canola	cytosol, mitochondrion	6.14	5.23
CDY44616	Canola	cytosol	3.61	4.85
CDY44615	Canola	cytosol	4.33	4.55
CDY43786	Canola	cytosol	12.27	3.03
CDX84486	Canola	cytosol	12.27	3.03
CDY31337	Canola	cytosol	12.27	3.02
CDY39828	Canola	cytosol	12.27	3.0
CDY22817	Canola	cytosol	15.88	2.55
CDY25197	Canola	cytosol	15.88	2.36
CDY48864	Canola	cytosol	15.88	2.26
CDY29353	Canola	cytosol	15.52	2.2
CDY64591	Canola	cytosol	15.52	2.2
CDY48094	Canola	cytosol	5.42	1.11

Protein Annotations

MapMan:35.1	GO:A0A078I681	UniProt:A0A078I681	EnsemblPlants:CDY44613	ProteinID:CDY44613	ProteinID:CDY44613.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006629	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0046854	GO:GO:0048015	EnsemblPlantsGene:GSBRNA2T00080559001
InterPro:IPR002420	InterPro:MHC_I/II-like_Ag-recog	PFAM:PF00792	InterPro:PI3K_C2_dom	InterPro:PI_Kinase	PFscan:PS51547
PANTHER:PTHR10048	PANTHER:PTHR10048:SF62	SUPFAM:SSF49562	SUPFAM:SSF54452	UniParc:UPI0004EDF317	SEG:seg

Description

BnaCnng11620DBnaCnng11620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I681]

Coordinates

chrLK032596:+:180844..182270

Molecular Weight (calculated)

31514.3 Da

IEP (calculated)

8.896

GRAVY (calculated)

-0.335

Length

277 amino acids

Sequence
(BLAST)

001: MGASEFRFFL SCDINSPVTF RIDKLDGIPP PSRNPLIRVL NKIRLYMFIA QWNPPRLVSV AEEKKQELYI ECALYINGAP FGLPMRTSES PLVAGMGFFL
101: RKTEGLIGGA TILLFNSKMQ MKSGKQKLRL WQGKEADGSF PTSTPGKVPR HECGELERLE KLMNKFERGQ IQSIDWLDRL MLMSLDKIKE QESSKHGNSN
201: LYLVIDFCSF EHRVVFQESG ANVLITSPIG STNEFVTVWD TELGKFNPSE HKQLKLARSL DIDIIDRDLK PSNAERK

Best Arabidopsis Sequence Match ( AT1G60490.1 )
(BLAST)

001: MGANEFRFFL SCDINSPVTF RIEKLDGNLP VKKSSDSGVV SIAEEKKPEL YIECALYIDG APFGLPMRTR LKTTGPPYCW NELITLSSKY RDLTAHSQLA
101: ITVWDVSCGK TEGLIGGATV LLFNSKMQMK SGKQKLRLWQ GKEADGSFPT STPGKVPRHE RGELERLEKL MNKYERGQIQ SIDWLDRLML KSLDTIKEQE
201: STKHGSSHLF VVIDFCSFEH RVVFQESGAN LFITAPIGST NEFVTVWDTE LGKTNPSENK QLKLARSLDR GIIDRDLKPS NIERKSIQRV LKYPPTRTLS
301: GDERQLLWKF RFSLMSEKRA LTKFLRCVEW SDVQEAKQAI QLMYKWEMID VCDALELLSP LFESEEVRAY AVSVLERADD EELQCYLLQL VQALRFERSD
401: RSCLSQFLVQ RALQNIELAS FLRWYVAVEL HDHVYAKRFY STYELLEENI IKLPPGVNGE DGYQLWQSLV RQTELTAQLC SITREVRNVR GNTQKKIEKL
501: RQLLGGLLSE LTYFEEPIRS PLTPNVLIKG IVAGESSLFK SALHPLRLTF RTPEEGGSCK LIFKKGDDLR QDQLVVQMVW LMDRLLKLEN LDLCLTPYKV
601: LATGHDEGML EFIPSRSLAQ ILSEHRSITS YLQKFHPDEH APFGITATCL DTFIKSCAGY SVITYILGIG DRHLDNLLLT DDGRLFHVDF AFILGRDPKP
701: FPPPMKLCKE MVEAMGGAES QYYTRFKSYC CEAYNILRKS SNLILNLFHL MAGSTIPDIA SDPEKGILKL QEKFRLDMDD EACIHFFQDL INESVSALFP
801: QMVETIHRWA QYWR

Arabidopsis Description

ATVPS34Phosphatidylinositol 3-kinase VPS34 [Source:UniProtKB/Swiss-Prot;Acc:P42339]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.