CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95259	Canola	cytosol	2.45	4.85
CDX75211	Canola	plastid	8.33	3.68
CDX98321	Canola	plasma membrane	5.39	2.74
CDX67760	Canola	plasma membrane	4.9	2.68
CDY53217	Canola	plasma membrane	4.41	2.13
CDY39959	Canola	plasma membrane	4.41	2.11
CDY66126	Canola	plasma membrane	4.41	2.1
CDX87329	Canola	plasma membrane	4.41	2.1
CDY32893	Canola	cytosol, nucleus, plasma membrane	1.96	2.05
CDY49244	Canola	plasma membrane	3.92	2.02
CDX69790	Canola	plasma membrane	3.92	1.83
CDX97074	Canola	plasma membrane	3.92	1.83
CDX75212	Canola	plasma membrane	3.43	1.69
CDX68808	Canola	plasma membrane	3.43	1.69
CDY35369	Canola	plasma membrane	3.43	1.62
CDY62504	Canola	plasma membrane	3.43	1.62
CDX71935	Canola	cytosol	3.43	1.11
CDY39767	Canola	plasma membrane	3.43	0.96
CDY03314	Canola	plasma membrane	3.43	0.95
CDX81963	Canola	plasma membrane	3.43	0.95
CDY13879	Canola	plasma membrane	3.43	0.95
CDY05735	Canola	plasma membrane	3.43	0.95
CDY31977	Canola	plasma membrane	3.43	0.95
CDX91819	Canola	plasma membrane	2.94	0.83
CDX90960	Canola	plasma membrane	2.94	0.83
CDY20707	Canola	plasma membrane	1.96	0.42
CDY32894	Canola	plasma membrane	1.96	0.38
CDY32753	Canola	plasma membrane	1.96	0.37
CDX95260	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY66127	EnsemblPlantsGene:GSBRNA2T00052133001	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PFAM:PF14709	PFscan:PS50137	ProteinID:CDY66127
ProteinID:CDY66127.1	SEG:seg	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0004EEB2F8	UniProt:A0A078JL67
MapMan:16.10.1.4.2	:	:	:	:	:

Description

BnaC02g46500DBnaC02g46500D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JL67]

Coordinates

chrLK035098:+:2409..3734

Molecular Weight (calculated)

23107.7 Da

IEP (calculated)

9.792

GRAVY (calculated)

-0.796

Length

204 amino acids

Sequence
(BLAST)

001: MEDDQKTKRN TSRRRSIIIN LKDIPPLDPS SIPTPSSLKP RTMMVPGTVP KQRYQEMRLE EDNVKSSFSN IQIDPNSTRS VSTTQENHPV LIPVEDPKSI
101: SKDETKKGSA KSLLHEMCIS KRWKPPVYDC CNVDGPCHMR LFTYKVVVEI RDSSGKTVLE CFGDPKHKKK AAAEHAAEGA LWYLDHAKPN QKKAASVTHH
201: HLLR

Best Arabidopsis Sequence Match ( AT1G80650.1 )
(BLAST)

001: MEDQETKRIT KKPSRSIIIS LKDIPPLDPS SIPSMKPMAQ DHHNVGMQRF QEKTDFKFEE EDNAISSFSN IQIDPNSTRS ISLEKKLAPK PDEEHTTTTK
101: PISKDDESKT RRGSAKSVLH EMCASKRWRP PVYECCNVDG PCHLRLFTYK VMVEIRDSSG KTVLECFGDP RRKKKAAAEH AAEGALWYLE HVKTKPHQ

Arabidopsis Description

RTL1Ribonuclease 3-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8N2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.