Factsheet for GSMUA_Achr1P01380_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 23599278

gfp PMID: 23599278 doi

YY Xiao, JY Chen, JF Kuang, W Shan, H Xie, YM Jiang, WJ Lu

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou 510642, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	69.42	70.79
GSMUA_AchrUn_...	Banana	nucleus	49.51	63.35
GSMUA_Achr5P19610_001	Banana	nucleus	71.84	58.96
GSMUA_Achr4P05520_001	Banana	nucleus, plastid	44.17	56.52
VIT_05s0049g00510.t01	Wine grape	nucleus	55.34	54.81
GSMUA_Achr4P12060_001	Banana	nucleus	54.37	54.37

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G01380_001	EnsemblPlants:GSMUA_Achr1P01380_001	EnsemblPlants:GSMUA_Achr1T01380_001
InterPro:IPR001471	InterPro:IPR036955	UniProt:M0RW46	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR31190	PANTHER:PTHR31190:SF67	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI000295C1C6	SEG:seg

Description

Putative Ethylene-responsive transcription factor 1B [Source:GMGC_GENE;Acc:GSMUA_Achr1G01380_001]

Coordinates

chr1:+:1091050..1091888

Molecular Weight (calculated)

22803.3 Da

IEP (calculated)

5.442

GRAVY (calculated)

-0.721

Length

206 amino acids

Sequence
(BLAST)

001: MDYSLSFHSH NQEHSSESST YSPRSSATDG FGLVCPDKPL PFDENDSEEM LLLSMLAEAS GKAASSSSSE VLDSRSSPRP KEEEVESRSK VGHDTKGEKP
101: YRGVRRRPWG KFAAEIRDST RRGIRVWLGT FDSAEAAALA YDQAAFSMRG TTAVLNFPVE RVREKSTSKK AKGREVRTAE SVVELEDLGA EYLEELLSTS
201: GFARPW

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.