Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr11P... | Banana | nucleus | 65.74 | 81.68 |
| GSMUA_Achr1P01380_001 | Banana | nucleus | 58.96 | 71.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 41.43 | 64.6 |
| VIT_05s0049g00510.t01 | Wine grape | nucleus | 52.19 | 62.98 |
| GSMUA_Achr4P05520_001 | Banana | nucleus, plastid | 39.84 | 62.11 |
| GSMUA_Achr4P12060_001 | Banana | nucleus | 45.02 | 54.85 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSMUA_Achr5G19610_001 | EnsemblPlants:GSMUA_Achr5P19610_001 | EnsemblPlants:GSMUA_Achr5T19610_001 |
| InterPro:IPR001471 | InterPro:IPR036955 | UniProt:M0SZZ0 | PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 |
| PANTHER:PTHR31190 | PANTHER:PTHR31190:SF35 | SMART:SM00380 | SUPFAM:SSF54171 | UniParc:UPI00029575DE | SEG:seg |
Description
Ethylene-responsive transcription factor 1B [Source:GMGC_GENE;Acc:GSMUA_Achr5G19610_001]
Coordinates
chr5:+:21233755..21234639
Molecular Weight (calculated)
27820.8 Da
IEP (calculated)
4.778
GRAVY (calculated)
-0.462
Length
251 amino acids
Sequence
(BLAST)
(BLAST)
001: MDYSLFQSLH SPESSTGSGD PFPWTGVGLF YPDVPVPFDM NDSEEMLLLG MLAEASGKAS SSLEACERSP AQPKEEEVDS QSKVADDPKV KSYRGVRKRP
101: WGKFAAEIRD STRHGIRVWL GTFDSAEAAA LAYDQAAFSM RGSTAVLNFP VDRVRESLNG MKCWDEQEEE GVSPVVVLKR KHSMRRKSMG KKAKQSETSI
201: RSAESVLELE DLGAEYLEQL LTTSEVAPIH AQLRDFEILL PPDATHQLPI L
101: WGKFAAEIRD STRHGIRVWL GTFDSAEAAA LAYDQAAFSM RGSTAVLNFP VDRVRESLNG MKCWDEQEEE GVSPVVVLKR KHSMRRKSMG KKAKQSETSI
201: RSAESVLELE DLGAEYLEQL LTTSEVAPIH AQLRDFEILL PPDATHQLPI L
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.