Factsheet for VIT_05s0049g00510.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0005g03230.t01	Wine grape	nucleus	66.35	61.88
VIT_07s0005g03260.t01	Wine grape	nucleus	66.35	61.06
VIT_07s0005g03270.t01	Wine grape	nucleus	59.62	55.86
GSMUA_Achr1P01380_001	Banana	nucleus	54.81	55.34
GSMUA_Achr11P...	Banana	nucleus	53.37	54.95
VIT_14s0081g00730.t01	Wine grape	nucleus	54.33	54.33
GSMUA_Achr5P19610_001	Banana	nucleus	62.98	52.19
VIT_07s0005g03280.t01	Wine grape	nucleus	51.44	49.08
VIT_10s0003g00590.t01	Wine grape	nucleus	36.54	27.44

Protein Annotations

EntrezGene:100261423	wikigene:100261423	MapMan:15.5.7.1	Gene3D:3.30.730.10	EMBL:AM468454	InterPro:AP2/ERF-transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN61702	ProteinID:CAN61702.1	ProteinID:CCB48545	ProteinID:CCB48545.1
InterPro:DNA-bd_dom_sf	UniProt:F6H8M0	EMBL:FN595496	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100261423	wikigene:LOC100261423	PFAM:PF00847
PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF67	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI00015C8286	ArrayExpress:VIT_05s0049g00510	EnsemblPlantsGene:VIT_05s0049g00510	EnsemblPlants:VIT_05s0049g00510.t01	RefSeq:XP_002281052
RefSeq:XP_002281052.2	RefSeq:XP_010650070.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr5:+:7567335..7580633

Molecular Weight (calculated)

23470.6 Da

IEP (calculated)

4.914

GRAVY (calculated)

-0.547

Length

208 amino acids

Sequence
(BLAST)

001: MTSFSLINSL NSDSDFNLLS DSFSWENSLP FNENDSQEML LLGMLASSTQ ETSETVSLNR VKEEEVTSQE NPEKEKSYRG VRRRPWGKFA AEIRDSTRHG
101: IRVWLGTFDS AEAAALAYDQ AAFAMRGPAA VLNFPVERVK ESMQEIKCIL EEGGSPVVAL KKRHSMRRKS PCKKHKSEEV RLENVVVLED LGTEYLEQLL
201: TFSETSSP

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.