Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- golgi 2
- vacuole 3
- extracellular 2
- endoplasmic reticulum 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P29210_001 | Banana | golgi, peroxisome, plasma membrane | 77.78 | 19.87 |
| GSMUA_Achr8P19620_001 | Banana | plasma membrane | 47.86 | 13.49 |
| GSMUA_Achr3P05680_001 | Banana | plasma membrane | 41.88 | 12.25 |
| GSMUA_Achr11P... | Banana | golgi, peroxisome, plasma membrane | 43.59 | 11.97 |
| GSMUA_Achr5P05070_001 | Banana | cytosol, peroxisome, plasma membrane | 43.59 | 11.28 |
| GSMUA_Achr3P05320_001 | Banana | cytosol, peroxisome, plasma membrane | 43.59 | 11.11 |
| GSMUA_Achr4P06590_001 | Banana | cytosol, golgi, peroxisome | 7.69 | 2.43 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P06600_001 | EnsemblPlants:GSMUA_Achr4T06600_001 | EnsemblPlantsGene:GSMUA_Achr4G06600_001 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:NaCa_Exmemb | PANTHER:PTHR31503 | PANTHER:PTHR31503:SF21 |
| PFAM:PF01699 | TMHMM:TMhelix | UniParc:UPI000296EF19 | UniProt:M0SLM7 | MapMan:35.1 | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G06600_001]
Coordinates
chr4:+:4965071..4966203
Molecular Weight (calculated)
12469.5 Da
IEP (calculated)
4.090
GRAVY (calculated)
0.844
Length
117 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVNVEMSQD ITLGVSLGSA TQISMFVVPL SVIVAWIMGI KMDLDLKLLE TSSLIMAILV IAFTLQDGTS HYLKGLVPLL CYLAIGACFF VFDSQTDQNN
101: GIDAGGLTTT AAVTKAY
101: GIDAGGLTTT AAVTKAY
001: MGSIVEPWAA IAENGNANVT AKGSSRELRH GRTAHNMSSS SLRKKSDLRL VQKVPCKTLK NILSNLQEVI LGTKLTLLFL AIPLAILANS YNYGRPLIFG
101: LSLIGLTPLA ERVSFLTEQL AFYTGPTVGG LLNATCGNAT ELIIAILALA NNKVAVVKYS LLGSILSNLL LVLGTSLFFG GIANIRREQR FDRKQADVNF
201: FLLLMGLLCH LLPLLLKYAA TGEVSTSMIN KMSLTLSRTS SIVMLIAYIA YLIFQLWTHR QLFEAQQDDD DAYDDEVSVE ETPVIGFWSG FAWLVGMTIV
301: IALLSEYVVD TIEDASDSWG LSVSFISIIL LPIVGNAAEH AGAIIFAFKN KLDISLGVAL GSATQISLFV VPLSVIVAWI LGIKMDLNFN ILETSSLALA
401: IIITAFTLQD GTSHYMKGLV LLLCYVIIAA CFFVDQIPQP NDLDVGLQPM NNLGEVFSA
101: LSLIGLTPLA ERVSFLTEQL AFYTGPTVGG LLNATCGNAT ELIIAILALA NNKVAVVKYS LLGSILSNLL LVLGTSLFFG GIANIRREQR FDRKQADVNF
201: FLLLMGLLCH LLPLLLKYAA TGEVSTSMIN KMSLTLSRTS SIVMLIAYIA YLIFQLWTHR QLFEAQQDDD DAYDDEVSVE ETPVIGFWSG FAWLVGMTIV
301: IALLSEYVVD TIEDASDSWG LSVSFISIIL LPIVGNAAEH AGAIIFAFKN KLDISLGVAL GSATQISLFV VPLSVIVAWI LGIKMDLNFN ILETSSLALA
401: IIITAFTLQD GTSHYMKGLV LLLCYVIIAA CFFVDQIPQP NDLDVGLQPM NNLGEVFSA
Arabidopsis Description
CAX3Cation exchanger 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSS9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.