Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G201900.1 | Wheat | nucleus | 78.87 | 86.15 |
| TraesCS4D01G102800.1 | Wheat | nucleus | 80.28 | 85.71 |
| TraesCS4B01G106100.1 | Wheat | nucleus | 86.62 | 85.42 |
| HORVU4Hr1G016860.1 | Barley | cytosol | 29.58 | 34.43 |
Protein Annotations
| EMBL:AK360214 | EnsemblPlants:HORVU4Hr1G016840.1 | EnsemblPlantsGene:HORVU4Hr1G016840 | SEG:seg | UniParc:UPI00020058CE | UniProt:F2D8K2 |
| MapMan:35.2 | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D8K2]
Coordinates
chrchr4H:+:70924455..70925746
Molecular Weight (calculated)
15907.8 Da
IEP (calculated)
9.805
GRAVY (calculated)
-0.808
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MMVWSTSKQQ GGDRAESKQH KMVKEMKSSE TPTFTYQLPF HSLSLNKVKN IEVDRLRLSF TTPKHSTLVP VDSDSDEESD DCSDIDHAVN STGGQMAADK
101: PVDAGLDHIC SGLHAIPRKN KARSAKKRSH KLSSRKFYKI FS
101: PVDAGLDHIC SGLHAIPRKN KARSAKKRSH KLSSRKFYKI FS
001: MRSETQESQV AYVTFKDSQG AETAMLLTGA VIADLRVSIT PAVNYQLPPE ALALDSEHSF NGFSVKKAED VVNIMVGRGY ALGKDAMEKA KAFDDRHNLI
101: SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI
201: ITLDPSSPKV PAVVPVKLG
101: SNASATIASL DDKMGLSEKL SIGTTVVNEK LRDIDERYQV REITKSALAA AEETAISART ALMANPYVSS GASWFSNAFG AVTKAVKEKV ENGGEGRKEI
201: ITLDPSSPKV PAVVPVKLG
Arabidopsis Description
RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:F4HVJ1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.