Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G201900.1 | Wheat | nucleus | 89.47 | 91.54 |
| TraesCS4B01G106100.1 | Wheat | nucleus | 92.48 | 85.42 |
| HORVU4Hr1G016840.1 | Barley | nucleus | 85.71 | 80.28 |
| HORVU4Hr1G016860.1 | Barley | cytosol | 30.83 | 33.61 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G102800.1 | EnsemblPlantsGene:TraesCS4D01G102800 | SEG:seg | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr4D:-:81913568..81913969
Molecular Weight (calculated)
15326.2 Da
IEP (calculated)
9.224
GRAVY (calculated)
-0.939
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MMWSSSKQQG GDREEWKQHK MVKEVKKSET PIFTYQLPFH SLPLNKVKNI EVDRLRLSFT TPKNSTLVPV DSGSDEESDE DQGCSDIDSD KPMDEVLDHI
101: CCGLHAIPRK NKARSAKKRS HKLSSRKFYK IFS
101: CCGLHAIPRK NKARSAKKRS HKLSSRKFYK IFS
001: MSDNLKHPLD CTASEESLER LSKVARIEGF SDEESEEQQG LADLESMNPV NPRVQRYLVA IEYIGTRFSG SQQQAKDRTV VGVLQEAFHK FIGQPVKIFC
101: SSRTDAGVHA LSNVCHVDVE RISKRKPGEV LPPHEPGVVQ RAVNHFLQRK DGDVMVIDVR CVPSNYHARY KAQERTYFYR LLSGSDPLSI LEKDRCWHVP
201: EELNLRFMQE ACRVLVGSHD FSSFRAAGCQ AKSPMRSLDE LNITEVPSTP YFPSITERTL SNLNNGDPLA CSNQPKSETA GVTTNVGEVE GSTEGDSFGR
301: RRRHRCYVVT ARSRGFLYHQ VRLIVGALKC VGTGELTVSD VERILEAKTV SAAKPMAPAS GLYLARVRYE FP
101: SSRTDAGVHA LSNVCHVDVE RISKRKPGEV LPPHEPGVVQ RAVNHFLQRK DGDVMVIDVR CVPSNYHARY KAQERTYFYR LLSGSDPLSI LEKDRCWHVP
201: EELNLRFMQE ACRVLVGSHD FSSFRAAGCQ AKSPMRSLDE LNITEVPSTP YFPSITERTL SNLNNGDPLA CSNQPKSETA GVTTNVGEVE GSTEGDSFGR
301: RRRHRCYVVT ARSRGFLYHQ VRLIVGALKC VGTGELTVSD VERILEAKTV SAAKPMAPAS GLYLARVRYE FP
Arabidopsis Description
tRNA pseudouridine synthase [Source:UniProtKB/TrEMBL;Acc:F4I2L0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.