Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G033410.3 | Barley | cytosol | 95.74 | 56.25 |
| HORVU7Hr1G034980.2 | Barley | cytosol, plastid, vacuole | 78.72 | 40.66 |
| HORVU1Hr1G072200.2 | Barley | cytosol | 53.19 | 14.79 |
| HORVU1Hr1G051610.3 | Barley | nucleus | 53.19 | 14.04 |
| HORVU3Hr1G038430.3 | Barley | nucleus, plastid | 53.19 | 13.23 |
| HORVU4Hr1G084760.5 | Barley | plastid | 53.19 | 12.95 |
| HORVU2Hr1G094030.8 | Barley | nucleus, plastid | 48.94 | 10.65 |
| HORVU3Hr1G086540.2 | Barley | endoplasmic reticulum, golgi, plastid | 53.19 | 9.88 |
Protein Annotations
| Gene3D:3.10.110.10 | MapMan:35.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 |
| EnsemblPlantsGene:HORVU4Hr1G050950 | EnsemblPlants:HORVU4Hr1G050950.1 | InterPro:IPR000608 | InterPro:IPR016135 | UniProt:M0VHJ4 | PFAM:PF00179 |
| ScanProsite:PS00183 | PFscan:PS50127 | PANTHER:PTHR43898 | PANTHER:PTHR43898:SF7 | SUPFAM:SSF54495 | InterPro:UBQ-conjugat_E2 |
| InterPro:UBQ-conjugating_AS | InterPro:UBQ-conjugating_enzyme/RWD | UniParc:UPI000296EFCA | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:415930965..415931658
Molecular Weight (calculated)
5454.7 Da
IEP (calculated)
7.517
GRAVY (calculated)
0.155
Length
47 amino acids
Sequence
(BLAST)
(BLAST)
1: MLHIIGTFKL TLQFTEDYPN KPPTVRFVSR MFHPNIYADG SICLDIL
001: MSTPARKRLM RDFKRLQQDP PAGISGAPQD NNIMLWNAVI FGPDDTPWDG GTFKLSLQFS EDYPNKPPTV RFVSRMFHPN IYADGSICLD ILQNQWSPIY
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
101: DVAAILTSIQ SLLCDPNPNS PANSEAARMF SESKREYNRR VREVVEQSWT AD
Arabidopsis Description
UBC2UBC2 [Source:UniProtKB/TrEMBL;Acc:A0A178W0U6]
SUBAcon: [nucleus,mitochondrion]
SUBAcon: [nucleus,mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.