CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
mitochondrion 1
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	plasma membrane

endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24907	Soybean	plastid	15.25	99.07
KRH24908	Soybean	golgi, nucleus, plasma membrane	75.11	90.47
KRH22922	Soybean	endoplasmic reticulum	60.72	78.29
VIT_06s0004g03100.t01	Wine grape	golgi, plasma membrane, plastid	71.65	71.24
PGSC0003DMT400077488	Potato	plasma membrane	59.14	69.78
KRH26393	Soybean	plasma membrane	57.7	69.74
Solyc06g010030.2.1	Tomato	plasma membrane	58.99	69.37
KRH26395	Soybean	golgi, plasma membrane	57.99	69.24
Solyc11g069220.1.1	Tomato	golgi, plasma membrane	48.92	67.19
GSMUA_Achr8P11320_001	Banana	plasma membrane	52.95	65.25
GSMUA_Achr4P04380_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	48.35	62.45
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, plastid	49.93	61.85
KRH70034	Soybean	plasma membrane	50.79	61.61
KRH08381	Soybean	plasma membrane	50.79	61.28
KRH08380	Soybean	plasma membrane	49.93	60.77
KRH34892	Soybean	plasma membrane	45.32	58.77
KRG91873	Soybean	plasma membrane	46.62	57.96
KRH70033	Soybean	golgi	32.37	56.39
KRH60889	Soybean	plasma membrane	37.55	49.81
KRH51571	Soybean	plasma membrane	37.55	49.53
KRH51573	Soybean	endoplasmic reticulum, nucleus, plasma membrane	38.42	49.35
KRH60891	Soybean	plasma membrane	38.56	48.99
KRH21344	Soybean	nucleus, plasma membrane, vacuole	34.82	47.64
KRH67665	Soybean	plasma membrane	33.67	47.18
KRG95953	Soybean	plastid	33.24	46.57
KRH72065	Soybean	plasma membrane	19.28	44.52
KRH76519	Soybean	golgi	36.26	42.14
KRH07806	Soybean	plasma membrane	34.68	41.84
KRH39404	Soybean	plasma membrane	34.39	41.42
KRH28943	Soybean	plasma membrane	35.68	41.33
KRH51360	Soybean	cytosol, golgi, plasma membrane	28.2	40.16
KRH60671	Soybean	cytosol, golgi, plasma membrane	28.78	39.53
KRH55861	Soybean	nucleus, plasma membrane, vacuole	32.52	39.44
KRH25665	Soybean	cytosol, plasma membrane, vacuole	32.23	39.09
KRH07301	Soybean	plasma membrane	29.06	38.92
KRH66249	Soybean	cytosol, golgi, plasma membrane	28.78	38.68
KRH11698	Soybean	plasma membrane	27.48	38.51
KRH27226	Soybean	cytosol, endoplasmic reticulum, plasma membrane	28.63	36.72
KRH22115	Soybean	plasma membrane	28.78	34.19
KRH55331	Soybean	nucleus	24.6	33.73
KRH26358	Soybean	plasma membrane	17.55	31.69
KRH28808	Soybean	cytosol, golgi, plasma membrane	23.74	31.13
KRH44082	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	24.89	31.12
KRH76645	Soybean	cytosol, golgi, plasma membrane	23.74	30.84

Protein Annotations

EnsemblPlants:KRG89017	EnsemblPlantsGene:GLYMA_U019600	EntrezGene:100794779	GO:GO:0005575	GO:GO:0006950	GO:GO:0006952
GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	InterPro:Mlo	InterPro:SecG/Sec61-beta/Sbh	PANTHER:PTHR31942
PANTHER:PTHR31942:SF34	PFAM:PF03094	PFAM:PF03911	ProteinID:KRG89017	ProteinID:KRG89017.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0006EDA650	UniProt:A0A0R0E4D1	MapMan:23.3.1.3.2	:	:

Description

hypothetical protein

Coordinates

chrscaffold_21:-:3243422..3255541

Molecular Weight (calculated)

78131.9 Da

IEP (calculated)

10.022

GRAVY (calculated)

0.002

Length

695 amino acids

Sequence
(BLAST)

001: MAGGSGGRNL EETPTWAVSA VCFVLILISI IIEHIIHLIG KWLKKKHKTA LYESLEKIKS ELMLLGFISL LLTVGQGPIS RICISEKVAG TWHPCDDSSS
101: IHESDTEESE NVNGTNSRRL LAAFYGSDDV NPRRVLAGGG TDKCREGKVP FVSSDGIHQL HIFIFVLAVF HVLYCILTMA LGRAKMKRWK RWEEETKTPE
201: YQFSHDPERF RFARETSFGR RHLSFWTKNP VLMWIVCFFR QFVRSVPKVD YLTLRHGFIM AHLAPQSHSK FDFRKYIKRS LDEDFKVVVG ISPPFWFFAV
301: LFLLLNTHGW YSYLWLPFIP LIIILLVGTK LQVIITEMGL RIQQRGEVLK GVPLVQPGDH LFWFNRPGLI LYLINFVLFQ NAFQLAFFAW SALQFGIKSC
401: FHSHTEDVVI RITMGVLIQI LCSYVTLPLY ALVTQMGSTM KPTIFNDRVA VALRNWHQTA KKHIRQNRVG PLSLSGTPTS SRPTTPSHHL SPVHLLRYYR
501: SEIDSFPASP RRSNFDDNNM DSPSPSYSLH QLPPQTTATT NDSANDNNAT THHEIVVMSG RKLLSTVYCL VCRRQICYDY LTSEHLILHA RGASQSQSTA
601: SHATTRPGVM APRGTAAATA GMRRRRLGGG TSSASVSGGS GAGGSNMLRF YTDDAPGLKI SPTVVLVMSL CFIGFVTALH VFGKLYRYRS SGATV

Best Arabidopsis Sequence Match ( AT2G39200.1 )
(BLAST)

001: MAIKERSLEE TPTWAVAVVC FVLLFISIMI EYFLHFIGHW FKKKHKKALS EALEKVKAEL MLLGFISLLL VVLQTPVSEI CIPRNIAATW HPCSNHQEIA
101: KYGKDYIDDG RKILEDFDSN DFYSPRRNLA TKGYDKCAEK GKVALVSAYG IHQLHIFIFV LAVFHVLYCI ITYALGKTKM KKWKSWERET KTIEYQYAND
201: PERFRFARDT SFGRRHLNIW SKSTFTLWIT CFFRQFFGSV TKVDYLTLRH GFIMAHLPAG SAARFDFQKY IERSLEQDFT VVVGISPLIW CIAVLFILTN
301: THGWDSYLWL PFLPLIVILI VGAKLQMIIS KLGLRIQEKG DVVKGAPVVE PGDDLFWFGR PRFILFLIHL VLFTNAFQLA FFVWSTYEFT LKNCFHHKTE
401: DIAIRITMGV LIQVLCSYIT LPLYALVTQM GTSMRPTIFN DRVANALKKW HHTAKKQTKH GHSGSNTPHS SRPTTPTHGM SPVHLLHNYN NRSLDQQTSF
501: TASPSPPRFS DYSGQGHGHQ HFFDPESQNH SYQREITDSE FSNSHHPQVD MASPVREEKE IVEHVKVDLS EFTFKK

Arabidopsis Description

MLO12MLO-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNS1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.