CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24907	Soybean	plastid	15.4	77.57
KRH26393	Soybean	plasma membrane	74.4	69.74
KRH26395	Soybean	golgi, plasma membrane	67.9	62.89
KRG89017	Soybean	endoplasmic reticulum	78.29	60.72
KRH24908	Soybean	golgi, nucleus, plasma membrane	62.34	58.23
VIT_06s0004g03100.t01	Wine grape	golgi, plasma membrane, plastid	73.84	56.94
PGSC0003DMT400077488	Potato	plasma membrane	59.18	54.16
Solyc06g010030.2.1	Tomato	plasma membrane	59.18	53.98
GSMUA_Achr8P11320_001	Banana	plasma membrane	54.55	52.13
Solyc11g069220.1.1	Tomato	golgi, plasma membrane	48.61	51.78
GSMUA_AchrUn_...	Banana	golgi, plasma membrane, plastid	51.76	49.73
GSMUA_Achr4P04380_001	Banana	cytosol, golgi, mitochondrion, plasma membrane	49.35	49.44
KRH70033	Soybean	golgi	36.36	49.12
KRH70034	Soybean	plasma membrane	50.65	47.64
KRH08381	Soybean	plasma membrane	50.83	47.57
KRH08380	Soybean	plasma membrane	49.91	47.11
KRG91873	Soybean	plasma membrane	46.38	44.72
KRH34892	Soybean	plasma membrane	44.16	44.4
KRH60889	Soybean	plasma membrane	39.15	40.27
KRH51571	Soybean	plasma membrane	39.33	40.23
KRH21344	Soybean	nucleus, plasma membrane, vacuole	37.66	39.96
KRH60891	Soybean	plasma membrane	38.96	38.39
KRH51573	Soybean	endoplasmic reticulum, nucleus, plasma membrane	38.4	38.26
KRH67665	Soybean	plasma membrane	35.06	38.1
KRG95953	Soybean	plastid	34.69	37.7
KRH72065	Soybean	plasma membrane	19.85	35.55
KRH76519	Soybean	golgi	38.78	34.95
KRH07806	Soybean	plasma membrane	37.29	34.9
KRH39404	Soybean	plasma membrane	36.92	34.49
KRH28943	Soybean	plasma membrane	38.22	34.33
KRH55861	Soybean	nucleus, plasma membrane, vacuole	35.99	33.86
KRH25665	Soybean	cytosol, plasma membrane, vacuole	35.25	33.16
KRH51360	Soybean	cytosol, golgi, plasma membrane	29.68	32.79
KRH60671	Soybean	cytosol, golgi, plasma membrane	30.61	32.61
KRH66249	Soybean	cytosol, golgi, plasma membrane	31.17	32.5
KRH07301	Soybean	plasma membrane	30.98	32.18
KRH11698	Soybean	plasma membrane	29.31	31.85
KRH27226	Soybean	cytosol, endoplasmic reticulum, plasma membrane	31.54	31.37
KRH26358	Soybean	plasma membrane	22.26	31.17
KRH55331	Soybean	nucleus	28.57	30.37
KRH22115	Soybean	plasma membrane	31.73	29.23
KRH44082	Soybean	endoplasmic reticulum, mitochondrion, nucleus, plasma membrane	27.27	26.44
KRH28808	Soybean	cytosol, golgi, plasma membrane	24.68	25.09
KRH76645	Soybean	cytosol, golgi, plasma membrane	24.86	25.05

Protein Annotations

MapMan:23.3.1.3.2	UniProt:A0A0R0GXL3	EMBL:ACUP02008441	EnsemblPlantsGene:GLYMA_13G327800	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005516	GO:GO:0005575	GO:GO:0006950	GO:GO:0006952	GO:GO:0008150
GO:GO:0009607	GO:GO:0016020	GO:GO:0016021	EnsemblPlants:KRH22922	ProteinID:KRH22922	ProteinID:KRH22922.1
InterPro:Mlo	PFAM:PF03094	PFAM:PF03911	PANTHER:PTHR31942	PANTHER:PTHR31942:SF34	InterPro:SecG/Sec61-beta/Sbh
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0006ED6193	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr13:-:42234583..42247067

Molecular Weight (calculated)

61315.2 Da

IEP (calculated)

11.068

GRAVY (calculated)

-0.005

Length

539 amino acids

Sequence
(BLAST)

001: MLLGFISLLL TVGEGVISRI CISEKVAGKF HPCSIKRVKP PLDDHHHDDT NGRRLLAAFL DSDNQNNRRI LALGARDKCA AQGKVPFVSS EAIHQLHIFI
101: FVLAVFHVLY CILTLALGRA KMRRWKRWEV ETKTAEYQFS HDPERFRFAR ETSFGRRHLS FWTQNTVLVW IVCFFRQFVR SVPKVDYLTL RHGFMMTHLG
201: PQSHQKFNFR KYIKRSLEED FKVVVEISPP IWFITVLFLL FNTHGWYSYL WLPFAPLIIV LLVGTKLQVI ITKMGQRIQQ RGEVVKGVPL VQPGDDLFWF
301: NKPRLILYLI NFVLFQNAFQ LAFFSWAALQ FMMKSCFHSQ KQDVVIRISM GIFVQFLCSY VTLPLYALVT QMGSTMKPTI FNERVARALR KWHHTAKKNV
401: KHNRGLRLQT PNHTKSNANF LRRYHSEMAT YPSSPIRGSS QSQSSTSTAT RPGPAGMAPR GSAAATAGMR RRRLGGGNSS ASTGVGGGSS NMLRFYTDDA
501: PGLKISPTVV LVMSLCFIGF VTALHVFGKL YRSKSGGTV

Best Arabidopsis Sequence Match ( AT1G11310.1 )
(BLAST)

001: MADQVKERTL EETSTWAVAV VCFVLLFISI VLEHSIHKIG TWFKKKHKQA LFEALEKVKA ELMLLGFISL LLTIGQTPIS NICISQKVAS TMHPCSAAEE
101: AKKYGKKDAG KKDDGDGDKP GRRLLLELAE SYIHRRSLAT KGYDKCAEKG KVAFVSAYGI HQLHIFIFVL AVVHVVYCIV TYAFGKIKMR TWKSWEEETK
201: TIEYQYSNDP ERFRFARDTS FGRRHLNFWS KTRVTLWIVC FFRQFFGSVT KVDYLALRHG FIMAHFAPGN ESRFDFRKYI QRSLEKDFKT VVEISPVIWF
301: VAVLFLLTNS YGLRSYLWLP FIPLVVILIV GTKLEVIITK LGLRIQEKGD VVRGAPVVQP GDDLFWFGKP RFILFLIHLV LFTNAFQLAF FAWSTYEFNL
401: NNCFHESTAD VVIRLVVGAV VQILCSYVTL PLYALVTQMG SKMKPTVFND RVATALKKWH HTAKNETKHG RHSGSNTPFS SRPTTPTHGS SPIHLLHNFN
501: NRSVENYPSS PSPRYSGHGH HEHQFWDPES QHQEAETSTH HSLAHESSEP VLASVELPPI RTSKSLRDFS FKK

Arabidopsis Description

MLO2MLO-like protein [Source:UniProtKB/TrEMBL;Acc:A0A178WQL2]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.