CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45621	Soybean	nucleus	96.98	96.98
Os06t0474866-00	Rice	cytosol	4.87	85.54
VIT_01s0127g00060.t01	Wine grape	plastid	73.0	72.45
CDY68027	Canola	cytosol, plastid	10.01	69.86
CDY20967	Canola	plastid	65.04	69.17
CDY20604	Canola	plastid	65.04	69.07
Bra018423.1-P	Field mustard	plastid	65.52	68.53
CDY34849	Canola	plastid	64.29	67.97
AT1G10760.1	Thale cress	cytosol, plastid	65.11	67.91
CDY66790	Canola	plastid	64.02	67.68
PGSC0003DMT400019845	Potato	cytosol	67.85	67.62
Solyc05g005020.2.1	Tomato	plastid	67.65	67.37
TraesCS1A01G346200.1	Wheat	cytosol, plastid	50.1	67.06
Bra031749.1-P	Field mustard	plastid	61.96	66.37
Os06t0498400-01	Rice	mitochondrion	63.81	65.84
HORVU1Hr1G082220.10	Barley	cytosol	54.7	65.52
EER89786	Sorghum	plastid	65.18	64.74
TraesCS1B01G359800.1	Wheat	mitochondrion	54.63	64.43
Zm00001d037059_P005	Maize	plastid	64.56	64.13
TraesCS7D01G235200.1	Wheat	plastid	63.81	64.07
TraesCS7B01G133400.1	Wheat	plastid	63.74	64.05
TraesCS7A01G235200.4	Wheat	plastid	63.47	63.86
TraesCS1D01G348900.2	Wheat	plastid	55.79	62.47
HORVU7Hr1G048330.1	Barley	cytosol	63.67	62.18
GSMUA_Achr3P14470_001	Banana	endoplasmic reticulum, plasma membrane, plastid	67.31	60.96
KRG93123	Soybean	cytosol	5.14	24.75
KRH36357	Soybean	plastid	14.46	18.24

Protein Annotations

EntrezGene:100788421	MapMan:3.2.3.1.1	Gene3D:3.30.1490.20	EMBL:ACUP02011047	InterPro:ATP_grasp_subdomain_1	ncoils:Coil
EnsemblPlantsGene:GLYMA_18G142500	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
InterPro:IPR013815	UniProt:K7MS29	EnsemblPlants:KRG99404	ProteinID:KRG99404	ProteinID:KRG99404.1	ProteinID:KRG99405.1
PFAM:PF01326	InterPro:PPDK_PEP-bd	PANTHER:PTHR22931	PANTHER:PTHR22931:SF1	SUPFAM:SSF56059	UniParc:UPI000233E9BB
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:22374882..22395227

Molecular Weight (calculated)

164071.0 Da

IEP (calculated)

6.743

GRAVY (calculated)

-0.406

Length

1459 amino acids

Sequence
(BLAST)

0001: MSQSIFHQTV LCQTQTVAEH QSKVSSLEVS ANKGKKNLFL TPTNFRGSRL CVRKRKLTMG RHHHRHVDAV PRAVLTTNLA SELSGKFNLD GNIELQIAVS
0101: SSEPGAARQV DFKVSYNSES LLLHWGVVRD QPGKWVLPSR HPDGTKNYKS RALRTPFVKS DSGSFLKIEI DDPAAQAIEF LILDEAKNKW FKNNGENFHI
0201: KLPVKSKLSQ EVSVPEDLVQ IQAYLRWERK GKQMYTPEQE KEEYEAARNE LLEEVARGTS VQDLHARLTK KTKAAEVKEP SVSETKTIPD ELVQIQAFIR
0301: WEKAGKPNYS REQQLMEFEE ARKELLEELE KGASLDAIRK KIVKGEIQTK VAKQLKTKKY FRAERIQRKK RDLMQLINRN VAQNIVEQVI DAPKALTVIE
0401: HYANAREEYE SGPVLNKTIY KLGDNYLLVL VTKDAGKIKV HLATDSKKPF TLHWALSRTS EEWLVPPETA LPPGSVTMNE AAETPFKAGS SSHPSYEVQS
0501: LDIEVDDDTF KGIPFVILSD GEWIKNNGSN FYIEFGGKKQ KQKDFGNGKG TAKFLLNKIA EMESEAQKSF MHRFNIASDL IDEAKNAGQL GLAGILVWMR
0601: FMATRQLIWN KNYNVKPREI SKAQDRLTDL LQDVYANYPQ YREIVRMILS TVGRGGEGDV GQRIRDEILV IQRNNDCKGG MMEEWHQKLH NNTSPDDVVI
0701: CQALIDYINS DFDIGVYWKA LNDNGITKER LLSYDRAIHS EPNFRRDQKE GLLRDLGNYM RTLKAVHSGA DLESAISNCM GYKSEGQGFM VGVKINPVPG
0801: LPTGFPELLE FVMEHVEEKN VEPLLEGLLE ARQELQPSLS KSQSRLKDLI FLDVALDSTV RTAVERSYEE LNNAGPEKIM YFISLVLENL ALSSDDNEDL
0901: IYCLKGWDVA LSMCKIKDTH WALYAKSVLD RTRLALTNKA HLYQEILQPS AEYLGSLLGV DKWAVEIFTE EIIRAGSAAS LSTLLNRLDP VLRKTAHLGS
1001: WQVISPVETV GYVEVVDELL TVQNKSYERP TILIANSVKG EEEIPDGTVA VLTPDMPDVL SHVSVRARNS KVCFATCFDP NILANLQEYK GKLLRLKPTS
1101: ADVVYSEVKE GEFIDDKSTQ LKDVGSVSPI SLARKKFSGR YAVSSEEFTG EMVGAKSRNI SYLKGKVASW IGIPTSVAIP FGVFEHVLSD KPNQAVAERV
1201: NNLKKKLTEG DFSVLKEIRE TVLQLNAPSQ LVEELKTKMK SSGMPWPGDE GEQRWEQAWI AIKKVWGSKW NERAYFSTRK VKLDHEYLSM AVLVQEVINA
1301: DYAFVIHTTN PASGDSSEIY AEVVKGLGET LVGAYPGRAL SFICKKRDLN SPQVLGYPSK PVGLFIRQSI IFRSDSNGED LEGYAGAGLY DSVPMDEAEK
1401: VVLDYSSDKL ILDGSFRQSI LSSIARAGNE IEELYGTPQD IEGVIKDGKV YVVQTRPQM

Best Arabidopsis Sequence Match ( AT1G10760.2 )
(BLAST)

0001: MSNSVVHNLL NRGLIRPLNF EHQNKLNSSV YQTSTANPAL GKIGRSKLYG KGLKQAGRSL VTETGGRPLS FVPRAVLAMD PQAAEKFSLD GNIDLLVEVT
0101: STTVREVNIQ IAYTSDTLFL HWGAILDNKE NWVLPSRSPD RTQNFKNSAL RTPFVKSGGN SHLKLEIDDP AIHAIEFLIF DESRNKWYKN NGQNFHINLP
0201: TERNVKQNVS VPEDLVQIQA YLRWERKGKQ MYNPEKEKEE YEAARTELRE EMMRGASVED LRAKLLKKDN SNESPKSNGT SSSGREEKKK VSKQPERKKN
0301: YNTDKIQRKG RDLTKLIYKH VADFVEPESK SSSEPRSLTT LEIYAKAKEE QETTPVFSKK TFKLEGSAIL VFVTKLSGKT KIHVATDFKE PVTLHWALSQ
0401: KGGEWLDPPS DILPPNSLPV RGAVDTKLTI TSTDLPSPVQ TFELEIEGDS YKGMPFVLNA GERWIKNNDS DFYVDFAKEE KHVQKDYGDG KGTAKHLLDK
0501: IADLESEAQK SFMHRFNIAA DLVDEAKSAG QLGFAGILVW MRFMATRQLV WNKNYNVKPR EISKAQDRLT DLLQDVYASY PEYRELLRMI MSTVGRGGEG
0601: DVGQRIRDEI LVIQRKNDCK GGIMEEWHQK LHNNTSPDDV VICQALMDYI KSDFDLSVYW KTLNDNGITK ERLLSYDRAI HSEPNFRGEQ KDGLLRDLGH
0701: YMRTLKAVHS GADLESAIQN CMGYQDDGEG FMVGVQINPV SGLPSGYPDL LRFVLEHVEE KNVEPLLEGL LEARQELRPL LLKSHDRLKD LLFLDLALDS
0801: TVRTAIERGY EQLNDAGPEK IMYFISLVLE NLALSSDDNE DLIYCLKGWQ FALDMCKSKK DHWALYAKSV LDRSRLALAS KAERYLEILQ PSAEYLGSCL
0901: GVDQSAVSIF TEEIIRAGSA AALSSLVNRL DPVLRKTANL GSWQVISPVE VVGYVIVVDE LLTVQNKTYD RPTIIVANRV RGEEEIPDGA VAVLTPDMPD
1001: VLSHVSVRAR NGKICFATCF DSGILSDLQG KDGKLLSLQP TSADVVYKEV NDSELSSPSS DNLEDAPPSI SLVKKQFAGR YAISSEEFTS DLVGAKSRNI
1101: GYLKGKVPSW VGIPTSVALP FGVFEKVISE KANQAVNDKL LVLKKTLDEG DQGALKEIRQ TLLGLVAPPE LVEELKSTMK SSDMPWPGDE GEQRWEQAWA
1201: AIKKVWASKW NERAYFSTRK VKLDHDYLCM AVLVQEVINA DYAFVIHTTN PSSGDSSEIY AEVVKGLGET LVGAYPGRSL SFICKKNNLD SPLVLGYPSK
1301: PIGLFIRRSI IFRSDSNGED LEGYAGAGLY DSVPMDEEDQ VVLDYTTDPL ITDLSFQKKV LSDIARAGDA IEKLYGTAQD IEGVIRDGKL YVVQTRPQV

Arabidopsis Description

GWD1Alpha-glucan water dikinase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SAC6]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.