CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 8
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 5
plastid 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

endoplasmic reticulum: 27224218
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12267	Soybean	extracellular	90.24	87.32
KRH02841	Soybean	extracellular	81.1	82.1
KRH19050	Soybean	endoplasmic reticulum	80.49	81.48
AT2G18980.1	Thale cress	extracellular	71.65	72.76
VIT_11s0052g00650.t01	Wine grape	extracellular	72.26	72.7
CDY28166	Canola	extracellular	71.65	72.53
Bra011170.1-P	Field mustard	extracellular	71.34	72.22
Bra024102.1-P	Field mustard	endoplasmic reticulum, extracellular	71.04	71.69
CDX72214	Canola	endoplasmic reticulum, extracellular	70.73	71.38
PGSC0003DMT400010469	Potato	extracellular	70.73	70.52
Solyc07g017880.2.1	Tomato	extracellular	70.43	70.21
AT4G30170.1	Thale cress	endoplasmic reticulum, extracellular	69.51	70.15
KRH04962	Soybean	extracellular	67.68	68.1
KRH58057	Soybean	mitochondrion	63.72	64.31
KRH04463	Soybean	endoplasmic reticulum	63.72	64.31
KRH77106	Soybean	endoplasmic reticulum	63.41	63.41
KRH28377	Soybean	endoplasmic reticulum	63.41	63.41
KRH06936	Soybean	extracellular	54.57	54.91
CDY51649	Canola	extracellular	63.41	54.59
KRH16131	Soybean	endoplasmic reticulum, plasma membrane	41.16	53.57
KRG94535	Soybean	extracellular	52.74	52.91
CDY66754	Canola	extracellular	69.82	48.62
KRG92108	Soybean	extracellular	43.29	43.56
KRH34676	Soybean	extracellular	42.68	42.42
KRH18583	Soybean	endoplasmic reticulum	40.55	41.96
KRG93402	Soybean	extracellular	40.85	41.49
KRH20350	Soybean	extracellular	43.6	40.97
KRH45758	Soybean	extracellular	40.24	40.87
KRG99232	Soybean	cytosol, mitochondrion, plastid	35.37	40.85
KRH12713	Soybean	extracellular, vacuole	24.39	39.22
KRH05338	Soybean	extracellular	38.72	38.48
KRH15691	Soybean	extracellular	38.41	38.3
KRH52303	Soybean	extracellular, vacuole	37.2	37.42
KRH61638	Soybean	cytosol	16.46	35.06
KRH50144	Soybean	cytosol	14.02	33.58

Protein Annotations

KEGG:00940+1.11.1.7	Gene3D:1.10.420.10	Gene3D:1.10.520.10	EntrezGene:100808542	MapMan:35.1	EMBL:ACUP02005437
EnsemblPlantsGene:GLYMA_09G057100	GO:GO:0003674	GO:GO:0003824	GO:GO:0004601	GO:GO:0005488	GO:GO:0005575
GO:GO:0005576	GO:GO:0006950	GO:GO:0006979	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016491	GO:GO:0020037	GO:GO:0042744	GO:GO:0046872	GO:GO:0055114
GO:GO:0098869	InterPro:Haem_peroxidase	InterPro:Haem_peroxidase_pln/fun/bac	UniProt:I1L1B0	InterPro:IPR002016	EnsemblPlants:KRH37292
ProteinID:KRH37292	ProteinID:KRH37292.1	PFAM:PF00141	PRINTS:PR00458	PRINTS:PR00461	ScanProsite:PS00435
ScanProsite:PS00436	PFscan:PS50873	PANTHER:PTHR31517	PANTHER:PTHR31517:SF10	MetaCyc:PWY-5461	MetaCyc:PWY-5466
MetaCyc:PWY-5469	MetaCyc:PWY-6824	MetaCyc:PWY-7214	MetaCyc:PWY-7445	InterPro:Peroxidase_pln	InterPro:Peroxidases_AS
InterPro:Peroxidases_heam-ligand_BS	SUPFAM:SSF48113	InterPro:Secretory_peroxidase	SignalP:SignalP-noTM	UniParc:UPI0002338FF8	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:5155247..5158842

Molecular Weight (calculated)

36568.6 Da

IEP (calculated)

8.007

GRAVY (calculated)

-0.189

Length

328 amino acids

Sequence
(BLAST)

001: MEDTSFFVIL SSFLLLIVST QTSSAQLTRG FYRNTCPNVE QLVRSAVEQK FQQTFVTAPA TLRLFFHDCF VRGCDASILL ASPNNKAEKN HPDDISLAGD
101: GFDTVVKAKA AVDSDPQCRN KVSCADILAL ATRDVINLAG GPFYEVELGR LDGRISTIAS VQRQLPHPDF NLDKLNSMFS FHGLTKTDMI ALSGAHTIGF
201: SHCNHFSRRI YNFSPQKLID PTLNLQYAFQ LRQACPLRVD SRIAINMDPV TPEKFDNQYF KNLQQGMGLF TSDQVLATDE RSRGTVNLFA SNEQAFNKAF
301: IEAITKMGRI GVKTGRQGEI RFDCSRVN

Best Arabidopsis Sequence Match ( AT2G18980.1 )
(BLAST)

001: MKNQSSFSIV ALLLIFFSSS VFAQLQTNFY RKSCPNVETI VRNAVRQKFQ QTFVTAPATL RLFFHDCFVR GCDASILLAS PSEKDHPDDK SLAGDGFDTV
101: AKAKQALDRD PNCRNKVSCA DILALATRDV VVLTGGPNYP VELGRRDGRL STVASVQHSL PQPSFKLDQL NTMFARHGLS QTDMIALSGA HTIGFAHCGK
201: FSKRIYNFSP KRPIDPTLNI RYALQLRQMC PIRVDLRIAI NMDPTSPNTF DNAYFKNLQK GMGLFTSDQV LFSDERSRST VNSFASSEAT FRQAFISAIT
301: KLGRVGVKTG NAGEIRRDCS RVN

Arabidopsis Description

PER16Peroxidase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q96518]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.