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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • nucleus 2
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d043491_P001 Maize nucleus 80.44 79.04
Zm00001d012736_P001 Maize plastid 51.56 64.44
TraesCS3B01G326000.1 Wheat nucleus 50.67 62.64
TraesCS3D01G291100.1 Wheat nucleus 50.22 62.43
Os01t0752500-01 Rice nucleus 57.33 60.85
TraesCS3A01G291400.1 Wheat nucleus 49.78 60.22
OQU84024 Sorghum nucleus 20.44 27.38
EER90462 Sorghum plastid 29.33 22.45
KXG22538 Sorghum nucleus 27.56 21.68
OQU88654 Sorghum nucleus 25.33 20.8
KXG34964 Sorghum nucleus 22.22 19.84
KXG35152 Sorghum nucleus 23.56 19.7
KXG28250 Sorghum nucleus 25.33 19.66
KXG28251 Sorghum nucleus 23.56 18.79
EER96030 Sorghum nucleus 24.44 16.27
EER98158 Sorghum nucleus 24.0 15.88
EES09974 Sorghum nucleus 22.22 15.67
Protein Annotations
MapMan:15.5.7.1Gene3D:3.30.730.10UniProt:A0A1B6Q643InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfInterPro:DNA-bd_dom_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001471InterPro:IPR036955
EnsemblPlants:KXG33377ProteinID:KXG33377ProteinID:KXG33377.1PFAM:PF00847PRINTS:PR00367PFscan:PS51032
PANTHER:PTHR31190PANTHER:PTHR31190:SF64SMART:SM00380EnsemblPlantsGene:SORBI_3003G297600SUPFAM:SSF54171UniParc:UPI00026630FA
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr3:+:62942081..62942758
Molecular Weight (calculated)
22713.6 Da
IEP (calculated)
10.153
GRAVY (calculated)
-0.176
Length
225 amino acids
Sequence
(BLAST)
001: MNTYMSLSLE SSSSTTTSSV VRDVATPAPL SSGASASSYP RAGAGMGMGT SLSLASAAAA AHGHGQYLPL NEDDSLEMVL FDVLREASGS AAAPTTYQPP
101: ASSLPTLKKA LASGAAARKG GGGGVGCSSR AAHAPKAATT GRHYRGVRRR PWGKYAAEIR DPARHGARLW LGTFATAEEA AAAYDRAAFR MRGAKALLNF
201: PPAVAGCGNA ATATAEQAAG VTEAK
Best Arabidopsis Sequence Match ( AT2G44840.1 )
(BLAST)
001: MSSSDSVNNG VNSRMYFRNP SFSNVILNDN WSDLPLSVDD SQDMAIYNTL RDAVSSGWTP SVPPVTSPAE ENKPPATKAS GSHAPRQKGM QYRGVRRRPW
101: GKFAAEIRDP KKNGARVWLG TYETPEDAAV AYDRAAFQLR GSKAKLNFPH LIGSCKYEPV RIRPRRRSPE PSVSDQLTSE QKRESHVDDG ESSLVVPELD
201: FTVDQFYFDG SLLMDQSECS YSDNRI
Arabidopsis Description
ERF13Ethylene-responsive transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q8L9K1]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.