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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 4
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G412200.1 Wheat nucleus 35.77 51.31
GSMUA_Achr4P05520_001 Banana nucleus, plastid 29.93 50.93
TraesCS5B01G308400.1 Wheat nucleus 36.13 47.37
TraesCS4A01G259200.1 Wheat nucleus 37.96 47.27
OQU84024 Sorghum nucleus 28.83 47.02
TraesCS5D01G314900.1 Wheat nucleus 35.77 46.89
GSMUA_AchrUn_... Banana nucleus 27.37 46.58
GSMUA_Achr4P12060_001 Banana nucleus 33.94 45.15
TraesCS4D01G315000.1 Wheat nucleus 33.94 44.71
KXG34964 Sorghum nucleus 40.15 43.65
TraesCS5D01G314400.1 Wheat nucleus 37.59 41.87
TraesCS4D01G310000.1 Wheat nucleus 36.86 41.39
TraesCS5A01G308000.1 Wheat nucleus 37.23 41.3
HORVU0Hr1G013490.1 Barley nucleus 37.59 41.2
HORVU5Hr1G079980.1 Barley nucleus 37.59 41.2
TraesCS4B01G312400.1 Wheat nucleus 36.5 40.65
TraesCS4B01G055500.1 Wheat nucleus 39.05 40.07
VIT_07s0005g03230.t01 Wine grape nucleus 32.48 39.91
VIT_07s0005g03260.t01 Wine grape nucleus 32.12 38.94
TraesCS7D01G031300.1 Wheat nucleus 36.86 37.83
HORVU4Hr1G079630.1 Barley nucleus 32.12 37.45
CDY10178 Canola nucleus 30.29 37.22
VIT_07s0005g03270.t01 Wine grape nucleus 29.56 36.49
VIT_07s0005g03280.t01 Wine grape nucleus 28.83 36.24
CDY47720 Canola nucleus 25.91 36.04
CDY10783 Canola nucleus 28.83 35.59
KXG28251 Sorghum nucleus 36.5 35.46
Bra022832.1-P Field mustard nucleus 29.56 34.76
CDY72380 Canola nucleus 29.56 34.76
CDY23951 Canola nucleus 29.56 34.76
KXG35152 Sorghum nucleus 33.94 34.57
Bra015478.1-P Field mustard nucleus 29.56 34.32
EER90462 Sorghum plastid 36.5 34.01
EER96030 Sorghum nucleus 41.61 33.73
EES09974 Sorghum nucleus 39.05 33.54
EER98158 Sorghum nucleus 41.61 33.53
CDY09984 Canola nucleus 27.74 33.33
AT1G06160.1 Thale cress nucleus 29.56 33.2
CDY24746 Canola nucleus 28.83 32.92
Bra018271.1-P Field mustard nucleus 28.83 32.92
Bra032433.1-P Field mustard nucleus 27.37 32.89
CDY06202 Canola nucleus 27.37 32.75
AT2G31230.1 Thale cress nucleus 28.83 32.51
KXG28250 Sorghum nucleus 32.85 31.03
Bra021712.1-P Field mustard nucleus 29.2 30.19
CDY15417 Canola nucleus 29.2 29.96
KXG33377 Sorghum plastid 20.8 25.33
KXG22538 Sorghum nucleus 24.09 23.08
Os05t0448675-00 Rice nucleus 9.85 12.39
Protein Annotations
Gene3D:3.30.730.10MapMan:35.1UniProt:A0A1W0W2N4InterPro:AP2/ERF_domInterPro:AP2/ERF_dom_sfInterPro:DNA-bd_dom_sf
GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700GO:GO:0005488GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139GO:GO:0006351GO:GO:0006355
GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:IPR001471InterPro:IPR036955
EnsemblPlants:OQU88654ProteinID:OQU88654ProteinID:OQU88654.1PFAM:PF00847PRINTS:PR00367PFscan:PS51032
PANTHER:PTHR31190PANTHER:PTHR31190:SF34SMART:SM00380EnsemblPlantsGene:SORBI_3002G069166SUPFAM:SSF54171UniParc:UPI0009DC8B8C
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr2:-:6888084..6888908
Molecular Weight (calculated)
29040.2 Da
IEP (calculated)
7.267
GRAVY (calculated)
-0.414
Length
274 amino acids
Sequence
(BLAST)
001: MGGAGVVDMH QFSALMGAAS ISKNSTTSGS GCSASSTTFY APAAACLPHH QHGEVMAPAY AFALPAAMMQ MQPDDVVNGW SRRDLKLRQK EKENAAAAEE
101: APALIGVRKR PWGKYAAEIR DSTRNGQRVW IGTFDTPEAA ALVYDQAAYS MRGPAAVRNF PVEHVEESLR ALRLSGGGGG AGDGDGDGDS PVLALKRRHC
201: IRKRLRKNKK IATAGMQGCG HGSAEAREQT AATASHGQKD KITAGAGVLE LEDLGTDYLE ELLALSDQCS EQFH
Best Arabidopsis Sequence Match ( AT2G31230.1 )
(BLAST)
001: MEYSQSSMYS SPSSWSSSQE SLLWNESCFL DQSSEPQAFF CPNYDYSDDF FSFESPEMMI KEEIQNGDVS NSEEEEKVGI DEERSYRGVR KRPWGKFAAE
101: IRDSTRNGIR VWLGTFDKAE EAALAYDQAA FATKGSLATL NFPVEVVRES LKKMENVNLH DGGSPVMALK RKHSLRNRPR GKKRSSSSSS SSSNSSSCSS
201: SSSTSSTSRS SSKQSVVKQE SGTLVVFEDL GAEYLEQLLM SSC
Arabidopsis Description
ERF15Ethylene-responsive transcription factor 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYM0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.