Factsheet for Os05t0448675-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G314400.1	Wheat	nucleus	18.81	16.67
TraesCS5A01G308000.1	Wheat	nucleus	18.35	16.19
HORVU5Hr1G079980.1	Barley	nucleus	18.35	16.0
HORVU0Hr1G013490.1	Barley	nucleus	18.35	16.0
TraesCS4D01G310000.1	Wheat	nucleus	17.43	15.57
EES09974	Sorghum	nucleus	22.48	15.36
HORVU4Hr1G079630.1	Barley	nucleus	16.51	15.32
TraesCS4B01G312400.1	Wheat	nucleus	16.97	15.04
TraesCS5D01G314900.1	Wheat	nucleus	14.22	14.83
TraesCS4B01G055500.1	Wheat	nucleus	17.43	14.23
Zm00001d019098_P001	Maize	nucleus	23.39	14.09
TraesCS7D01G031300.1	Wheat	nucleus	16.97	13.86
EER96030	Sorghum	nucleus	21.1	13.61
EER98158	Sorghum	nucleus	21.1	13.53
TraesCS5B01G308400.1	Wheat	nucleus	12.84	13.4
Zm00001d019096_P001	Maize	nucleus	19.72	13.07
GSMUA_AchrUn_...	Banana	nucleus	9.63	13.04
GSMUA_Achr4P12060_001	Banana	nucleus	11.47	12.14
TraesCS4D01G315000.1	Wheat	nucleus	11.47	12.02
TraesCS4A01G259200.1	Wheat	nucleus	11.93	11.82
TraesCS4A01G412200.1	Wheat	nucleus	10.09	11.52
VIT_07s0005g03280.t01	Wine grape	nucleus	11.01	11.01
CDY47720	Canola	nucleus	9.63	10.66
VIT_07s0005g03230.t01	Wine grape	nucleus	10.55	10.31
VIT_07s0005g03260.t01	Wine grape	nucleus	10.55	10.18
GSMUA_Achr4P05520_001	Banana	nucleus, plastid	7.34	9.94
OQU88654	Sorghum	nucleus	12.39	9.85
Os03t0860100-01	Rice	nucleus	10.09	9.78
Bra032433.1-P	Field mustard	nucleus	10.09	9.65
Os07t0410700-01	Rice	nucleus	10.55	9.62
CDY06202	Canola	nucleus	10.09	9.61
VIT_07s0005g03270.t01	Wine grape	nucleus	9.63	9.46
Os01t0752500-01	Rice	nucleus	9.17	9.43
CDY10178	Canola	nucleus	9.63	9.42
Os09t0572000-01	Rice	nucleus	10.09	9.24
CDY09984	Canola	nucleus	9.63	9.21
Bra015478.1-P	Field mustard	nucleus	9.63	8.9
CDY10783	Canola	nucleus	8.72	8.56
CDY24746	Canola	nucleus	9.17	8.33
AT2G31230.1	Thale cress	nucleus	9.17	8.23
AT1G06160.1	Thale cress	nucleus	9.17	8.2
Bra022832.1-P	Field mustard	nucleus	8.72	8.15
CDY72380	Canola	nucleus	8.72	8.15
CDY23951	Canola	nucleus	8.72	8.15
Bra021712.1-P	Field mustard	nucleus	9.63	7.92
Bra018271.1-P	Field mustard	nucleus	8.72	7.92
CDY15417	Canola	nucleus	9.63	7.87
Os05t0564700-00	Rice	cytosol	5.5	7.64

Protein Annotations

EnsemblPlants:Os05t0448675-00	EnsemblPlantsGene:Os05g0448675	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
ProteinID:BAS94308.1	SEG:seg	UniParc:UPI000393AE77	UniProt:A0A0P0WN85	MapMan:35.2	:

Description

Conserved hypothetical protein. (Os05t0448675-00)

Coordinates

chr5:+:22029223..22038152

Molecular Weight (calculated)

23709.6 Da

IEP (calculated)

5.862

GRAVY (calculated)

-0.858

Length

218 amino acids

Sequence
(BLAST)

001: MEPNYSDYHP NSVPFDAYYE HGHGHLDDHG HGHHHLIPAH PEPSYSYGNW SFLHADATAT SSSESSSASA SSGAAHIVGA SGPSASFVRQ LHFGGEYYDD
101: DAADISALME AASISCWTTN GGAGASTSQT TGLEGVEVMR RAAAPAPDNG SRKGKRTNIL PVRPWIDSGA VEREGRAPAS RDGEDGGEYR WWRWRRCGRD
201: LVEENGEGGG EDRWRRWR

Best Arabidopsis Sequence Match ( AT5G11430.1 )
(BLAST)

001: MEMAEINGSM QLVGKHKSLP QTTLGGGSAS EAPNKQVRPW LQQLSPASNG ILHIPTKILS QETLHSLMHG KKATQTESAP QKPAKPVVNK KQHVPPPQRS
101: VKAMEEVNES VRSKMRESLA SALALVKKDD DSPKGKENIG TVETPVITQE NTQSFQPASP ASISVPVGEG TMSEMPTSVE SSVQKDSEIP VDIMMEDVIK
201: FNVLKSQYDE VFPRDNVPFT DIIFPNDDLL HGNELSWDLE VSDLGETKDY GTGGEKSFQD PKLLASKIEM ELYKLFGGVN KKYRERGRSL LFNLKDKNNP
301: ELRERVMSEE ISAERLCSMT AEELASKELS QWRQAKAEEM AKMVVLQDTD IDVRSLVRKT HKGEFQVEIE PVDRGTVDVS GGIMSRSKRR PRAKSHSVKT
401: ALKDEAAKAD NEKSRSTPPS TEEIDPMQGL GIDDELKDVE FLPPIVSLDE FMESLDSEPP FESPHGNSEM QVSPSEKSDS EAGSDSKSPK GSPKELSDKS
501: LPEAKPEKID EVTPEFDANV KVDDDISRVE KAAALSDDKG ERAWDGILQL SMSSVVPVAG IFKSGEKAET SEWPAMVEVK GRVRLSGFGK FIQELPKSRT
601: RALMVMYLAY KDGISESQRG SLIEVIDSYV ADQRVGYAEP ASGVELYLCP TRGETLDLLN KVISQEQLDE VKSLDIGLVG VVVWRRAVVP KPGSGSKRQH
701: SFSSSIGSKT SVLPVNKKQR VHVTEKPLVV ASMRNHHHGY VKHDTAADDD VPPGFGPVAS RDEDDLPEFN FNSSVVPVSS PQPLPAQSKS LDQVRKLIHK
801: YGKSASTYDD DDDEDDIPEW QPHVPSHQLP PPPPPPLGFR PEVFRPPQDG WYDNQNGGSG QHYERNQSRN RGF

Arabidopsis Description

SPOC domain / Transcription elongation factor S-II protein [Source:UniProtKB/TrEMBL;Acc:F4JXV3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.