Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G412200.1 | Wheat | nucleus | 75.61 | 97.38 |
| TraesCS4D01G310000.1 | Wheat | nucleus | 91.46 | 92.21 |
| HORVU4Hr1G079630.1 | Barley | nucleus | 73.98 | 77.45 |
| TraesCS5B01G308400.1 | Wheat | nucleus | 58.94 | 69.38 |
| TraesCS4B01G055500.1 | Wheat | nucleus | 66.67 | 61.42 |
| GSMUA_Achr4P05520_001 | Banana | nucleus, plastid | 30.49 | 46.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.08 | 45.96 |
| GSMUA_Achr4P12060_001 | Banana | nucleus | 35.77 | 42.72 |
| TraesCS2B01G053900.1 | Wheat | nucleus | 34.55 | 41.67 |
| TraesCS2B01G054100.1 | Wheat | nucleus | 32.93 | 40.7 |
| VIT_07s0005g03270.t01 | Wine grape | nucleus | 34.96 | 38.74 |
| VIT_07s0005g03230.t01 | Wine grape | nucleus | 34.96 | 38.56 |
| TraesCS2B01G485200.1 | Wheat | nucleus | 39.02 | 38.55 |
| TraesCS2B01G485400.1 | Wheat | nucleus | 39.43 | 38.49 |
| VIT_07s0005g03260.t01 | Wine grape | nucleus | 34.96 | 38.05 |
| CDY10178 | Canola | nucleus | 33.74 | 37.22 |
| CDY47720 | Canola | nucleus | 29.27 | 36.55 |
| OQU88654 | Sorghum | nucleus | 40.65 | 36.5 |
| Zm00001d019096_P001 | Maize | nucleus | 47.56 | 35.56 |
| CDY09984 | Canola | nucleus | 32.11 | 34.65 |
| TraesCS5B01G565300.1 | Wheat | nucleus | 34.55 | 34.41 |
| VIT_07s0005g03280.t01 | Wine grape | nucleus | 30.49 | 34.4 |
| Bra015478.1-P | Field mustard | nucleus | 32.93 | 34.32 |
| Bra032433.1-P | Field mustard | nucleus | 31.71 | 34.21 |
| TraesCS1B01G342500.1 | Wheat | plastid | 37.4 | 34.2 |
| CDY06202 | Canola | nucleus | 31.71 | 34.06 |
| EER96030 | Sorghum | nucleus | 46.75 | 34.02 |
| EES09974 | Sorghum | nucleus | 43.9 | 33.86 |
| EER98158 | Sorghum | nucleus | 46.75 | 33.82 |
| CDY10783 | Canola | nucleus | 30.49 | 33.78 |
| TraesCS2B01G411500.1 | Wheat | plastid | 38.21 | 33.69 |
| TraesCS5B01G565400.1 | Wheat | nucleus | 30.89 | 33.48 |
| AT2G31230.1 | Thale cress | nucleus | 32.93 | 33.33 |
| CDY23951 | Canola | nucleus | 31.3 | 33.05 |
| Bra022832.1-P | Field mustard | nucleus | 31.3 | 33.05 |
| CDY72380 | Canola | nucleus | 31.3 | 33.05 |
| AT1G06160.1 | Thale cress | nucleus | 32.52 | 32.79 |
| TraesCS2B01G054000.1 | Wheat | nucleus | 34.15 | 32.31 |
| CDY24746 | Canola | nucleus | 31.3 | 32.08 |
| Bra018271.1-P | Field mustard | nucleus | 31.3 | 32.08 |
| Zm00001d019098_P001 | Maize | nucleus | 47.15 | 32.04 |
| TraesCS4B01G002000.1 | Wheat | nucleus | 41.46 | 30.91 |
| Bra021712.1-P | Field mustard | nucleus | 32.93 | 30.57 |
| TraesCS5B01G539300.1 | Wheat | plastid | 26.83 | 30.56 |
| CDY15417 | Canola | nucleus | 32.93 | 30.34 |
| TraesCS3B01G326000.1 | Wheat | nucleus | 20.73 | 28.02 |
| TraesCS1B01G427500.1 | Wheat | nucleus | 27.64 | 24.11 |
| TraesCS1B01G427600.1 | Wheat | nucleus | 28.05 | 23.79 |
| Os05t0448675-00 | Rice | nucleus | 15.04 | 16.97 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF34 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS4B01G312400 | EnsemblPlants:TraesCS4B01G312400.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr4B:-:602038622..602039362
Molecular Weight (calculated)
26639.2 Da
IEP (calculated)
7.008
GRAVY (calculated)
-0.295
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPTYDGFH CYHGSSISFS SNTHYTHHQL PPQAQAQVHA DTEIDHQLFA FSFPMEATST SFTTTPPAAS AWQEIVTVPV ASPSLLPQGS SSSSRDTPDS
101: PLIGVRKRPW GKYAAEIRDS TRNGARVWLG TFDTPHAAAL AYDQAAFSVR GPAAVLNFPV KLVQESLRTL DIGCAAAGDS PALALKRRHC IRKRRPNKKR
201: MSRATATAAE ATRQEAATAS SLSTCVLELE DLGADYLDEL LALSEL
101: PLIGVRKRPW GKYAAEIRDS TRNGARVWLG TFDTPHAAAL AYDQAAFSVR GPAAVLNFPV KLVQESLRTL DIGCAAAGDS PALALKRRHC IRKRRPNKKR
201: MSRATATAAE ATRQEAATAS SLSTCVLELE DLGADYLDEL LALSEL
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.