Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G001300.1 | Wheat | nucleus | 77.27 | 75.0 |
| HORVU4Hr1G000700.1 | Barley | nucleus | 74.55 | 70.69 |
| Os09t0572000-01 | Rice | nucleus | 43.33 | 60.08 |
| Zm00001d019734_P001 | Maize | nucleus | 41.52 | 53.31 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.45 | 52.17 |
| GSMUA_Achr4P05520_001 | Banana | nucleus, plastid | 25.45 | 52.17 |
| KXG35152 | Sorghum | nucleus | 42.42 | 52.04 |
| GSMUA_Achr4P12060_001 | Banana | nucleus | 30.0 | 48.06 |
| TraesCS5B01G308400.1 | Wheat | nucleus | 30.3 | 47.85 |
| TraesCS2B01G054100.1 | Wheat | nucleus | 28.48 | 47.24 |
| TraesCS2B01G485200.1 | Wheat | nucleus | 35.45 | 46.99 |
| TraesCS2B01G053900.1 | Wheat | nucleus | 28.79 | 46.57 |
| TraesCS2B01G485400.1 | Wheat | nucleus | 35.45 | 46.43 |
| VIT_07s0005g03230.t01 | Wine grape | nucleus | 30.91 | 45.74 |
| VIT_07s0005g03260.t01 | Wine grape | nucleus | 30.91 | 45.13 |
| VIT_07s0005g03270.t01 | Wine grape | nucleus | 29.09 | 43.24 |
| TraesCS4B01G312400.1 | Wheat | nucleus | 30.91 | 41.46 |
| VIT_07s0005g03280.t01 | Wine grape | nucleus | 25.76 | 38.99 |
| CDY10178 | Canola | nucleus | 26.06 | 38.56 |
| TraesCS5B01G565300.1 | Wheat | nucleus | 28.48 | 38.06 |
| CDY10783 | Canola | nucleus | 25.45 | 37.84 |
| CDY47720 | Canola | nucleus | 22.12 | 37.06 |
| TraesCS5B01G565400.1 | Wheat | nucleus | 25.45 | 37.0 |
| AT1G06160.1 | Thale cress | nucleus | 27.27 | 36.89 |
| CDY09984 | Canola | nucleus | 25.45 | 36.84 |
| Bra032433.1-P | Field mustard | nucleus | 25.15 | 36.4 |
| TraesCS4B01G055500.1 | Wheat | nucleus | 29.39 | 36.33 |
| CDY06202 | Canola | nucleus | 25.15 | 36.24 |
| CDY23951 | Canola | nucleus | 25.45 | 36.05 |
| Bra015478.1-P | Field mustard | nucleus | 25.76 | 36.02 |
| TraesCS2B01G054000.1 | Wheat | nucleus | 28.18 | 35.77 |
| Bra022832.1-P | Field mustard | nucleus | 25.15 | 35.62 |
| CDY72380 | Canola | nucleus | 25.15 | 35.62 |
| Bra018271.1-P | Field mustard | nucleus | 25.76 | 35.42 |
| CDY24746 | Canola | nucleus | 25.76 | 35.42 |
| AT2G31230.1 | Thale cress | nucleus | 26.06 | 35.39 |
| TraesCS5B01G539300.1 | Wheat | plastid | 23.03 | 35.19 |
| TraesCS2B01G411500.1 | Wheat | plastid | 29.7 | 35.13 |
| TraesCS1B01G342500.1 | Wheat | plastid | 28.48 | 34.94 |
| CDY15417 | Canola | nucleus | 26.67 | 32.96 |
| Bra021712.1-P | Field mustard | nucleus | 26.36 | 32.83 |
| TraesCS3B01G326000.1 | Wheat | nucleus | 17.27 | 31.32 |
| TraesCS1B01G427600.1 | Wheat | nucleus | 20.3 | 23.1 |
| TraesCS1B01G427500.1 | Wheat | nucleus | 19.39 | 22.7 |
Protein Annotations
| Gene3D:3.30.730.10 | MapMan:35.1 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF34 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS4B01G002000 | EnsemblPlants:TraesCS4B01G002000.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr4B:+:1101906..1102898
Molecular Weight (calculated)
35791.1 Da
IEP (calculated)
7.206
GRAVY (calculated)
-0.556
Length
330 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQHFVHFGA TTTPPPPQPK PKASPPLCYH TSSPTLADDY HTSSPMSSAF DMGDTDDMHL LNTLLLHIQT GSASSHVEPA HYSLDLELDM EPSSSSTSSS
101: SSYSSSEQQQ KHHGMPTTAG QSPTKRRASQ QQQPHPAPAA TKGLIGVRKR PWGKFAAEIR DSTRKGARVW LGTFNTPEAA AMAYDQAAFS VRGAAAVLNY
201: PVDRVQESLR TLALRPDVPG GSPVLALKRR HSIRKRSPNK AKKTALEPTK MMEQSAAAMP AQQQLLPVQS AGVVELEDLG ADYLEELLRV SDEPSASSTM
301: LMGAFDHHHH HHVDDQSALA STAPMLFPHC
101: SSYSSSEQQQ KHHGMPTTAG QSPTKRRASQ QQQPHPAPAA TKGLIGVRKR PWGKFAAEIR DSTRKGARVW LGTFNTPEAA AMAYDQAAFS VRGAAAVLNY
201: PVDRVQESLR TLALRPDVPG GSPVLALKRR HSIRKRSPNK AKKTALEPTK MMEQSAAAMP AQQQLLPVQS AGVVELEDLG ADYLEELLRV SDEPSASSTM
301: LMGAFDHHHH HHVDDQSALA STAPMLFPHC
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.