Factsheet for TraesCS4A01G001300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G002000.1	Wheat	nucleus	75.0	77.27
HORVU4Hr1G000700.1	Barley	nucleus	76.18	74.43
Os09t0572000-01	Rice	nucleus	42.06	60.08
TraesCS4A01G412200.1	Wheat	nucleus	30.88	54.97
GSMUA_AchrUn_...	Banana	nucleus	25.59	54.04
Zm00001d019734_P001	Maize	nucleus	40.0	52.92
KXG35152	Sorghum	nucleus	41.47	52.42
GSMUA_Achr4P05520_001	Banana	nucleus, plastid	24.41	51.55
GSMUA_Achr4P12060_001	Banana	nucleus	30.0	49.51
TraesCS2A01G463400.1	Wheat	nucleus	34.41	46.43
VIT_07s0005g03230.t01	Wine grape	nucleus	30.29	46.19
TraesCS4A01G259200.1	Wheat	nucleus	29.71	45.91
VIT_07s0005g03260.t01	Wine grape	nucleus	30.29	45.58
VIT_07s0005g03270.t01	Wine grape	nucleus	29.12	44.59
TraesCS2A01G041500.1	Wheat	nucleus	28.53	43.5
TraesCS5A01G308000.1	Wheat	nucleus	31.47	43.32
TraesCS4A01G314600.1	Wheat	nucleus	23.82	43.32
TraesCS4A01G314500.1	Wheat	nucleus	25.29	41.15
VIT_07s0005g03280.t01	Wine grape	nucleus	25.29	39.45
CDY10178	Canola	nucleus	25.29	38.56
TraesCS2A01G041600.1	Wheat	nucleus	28.53	38.34
CDY10783	Canola	nucleus	24.41	37.39
AT1G06160.1	Thale cress	nucleus	26.76	37.3
CDY09984	Canola	nucleus	25.0	37.28
TraesCS1A01G328800.1	Wheat	plastid	26.76	37.14
CDY47720	Canola	nucleus	21.47	37.06
Bra032433.1-P	Field mustard	nucleus	24.71	36.84
CDY06202	Canola	nucleus	24.71	36.68
Bra015478.1-P	Field mustard	nucleus	25.0	36.02
CDY23951	Canola	nucleus	24.41	35.62
Bra022832.1-P	Field mustard	nucleus	24.41	35.62
CDY72380	Canola	nucleus	24.41	35.62
CDY24746	Canola	nucleus	24.71	35.0
Bra018271.1-P	Field mustard	nucleus	24.71	35.0
AT2G31230.1	Thale cress	nucleus	25.0	34.98
TraesCS4A01G326400.1	Wheat	plastid	28.53	34.64
TraesCS2A01G393500.1	Wheat	plastid	27.94	33.93
CDY15417	Canola	nucleus	25.59	32.58
Bra021712.1-P	Field mustard	nucleus	25.29	32.45
TraesCS3A01G291400.1	Wheat	nucleus	15.88	29.03
TraesCS1A01G399500.1	Wheat	nucleus	20.29	23.79

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF34	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G001300	EnsemblPlants:TraesCS4A01G001300.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:932551..933573

Molecular Weight (calculated)

36513.6 Da

IEP (calculated)

6.910

GRAVY (calculated)

-0.444

Length

340 amino acids

Sequence
(BLAST)

001: MEQQFIHFGA TTSSTSSFYS TPTPTPPPPE QAQAAATLAS STRDYHTSSS PMSSAFDMGD TDDMHLLNTL LLHMSGSGTA ASSNHYAFDL HLDLDLHMDV
101: DVEPSSSSTS SSSSSYSSSD HHQQQQQQGM PATTTAKRRA PQQLHPAASK GLIGVRKRPW GKFAAEIRDS TRKGARVWLG TFNTPEAAAM AYDQAAFSVR
201: GAAAVLNYPV DRVQESLRTL ALRPDVPGGS PVLALKRRHS IRKRSPNKAK KTATLLAPTK MMINDSAAAP VQQQSAAACA GVVELEDLGA DYLEELLRVS
301: DEPSASSTTM VMGAFDHHHH HHVDDQSALA NTAPMLLPHC

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.