Factsheet for TraesCS4A01G326400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G549200.1	Wheat	nucleus	77.14	88.52
TraesCS4A01G314500.1	Wheat	nucleus	60.0	80.38
TraesCS4A01G314600.1	Wheat	nucleus	53.57	80.21
TraesCS5B01G539300.1	Wheat	plastid	58.21	75.46
TraesCS2A01G393500.1	Wheat	plastid	74.29	74.29
TraesCS1A01G328800.1	Wheat	plastid	61.79	70.61
GSMUA_Achr4P05520_001	Banana	nucleus, plastid	32.86	57.14
GSMUA_Achr4P12060_001	Banana	nucleus	39.29	53.4
GSMUA_AchrUn_...	Banana	nucleus	30.0	52.17
Zm00001d034920_P001	Maize	plastid	52.14	51.23
EER90462	Sorghum	plastid	53.21	50.68
VIT_07s0005g03230.t01	Wine grape	nucleus	39.64	49.78
VIT_07s0005g03260.t01	Wine grape	nucleus	39.64	49.12
Os03t0860100-01	Rice	nucleus	38.93	48.44
VIT_07s0005g03270.t01	Wine grape	nucleus	36.43	45.95
TraesCS4A01G412200.1	Wheat	nucleus	31.07	45.55
CDY10783	Canola	nucleus	33.57	42.34
TraesCS4A01G259200.1	Wheat	nucleus	33.21	42.27
CDY10178	Canola	nucleus	32.5	40.81
CDY09984	Canola	nucleus	33.21	40.79
TraesCS2A01G463400.1	Wheat	nucleus	36.43	40.48
Bra032433.1-P	Field mustard	nucleus	32.86	40.35
CDY06202	Canola	nucleus	32.86	40.17
CDY47720	Canola	nucleus	28.21	40.1
CDY72380	Canola	nucleus	33.21	39.91
Bra022832.1-P	Field mustard	nucleus	33.21	39.91
TraesCS2A01G041500.1	Wheat	nucleus	31.79	39.91
VIT_07s0005g03280.t01	Wine grape	nucleus	31.07	39.91
Bra018271.1-P	Field mustard	nucleus	33.93	39.58
CDY24746	Canola	nucleus	33.93	39.58
CDY23951	Canola	nucleus	32.86	39.48
AT2G31230.1	Thale cress	nucleus	33.93	39.09
AT1G06160.1	Thale cress	nucleus	33.93	38.93
Bra015478.1-P	Field mustard	nucleus	32.14	38.14
TraesCS5A01G308000.1	Wheat	nucleus	33.21	37.65
Bra021712.1-P	Field mustard	nucleus	33.93	35.85
CDY15417	Canola	nucleus	33.93	35.58
TraesCS2A01G041600.1	Wheat	nucleus	30.0	33.2
TraesCS3A01G291400.1	Wheat	nucleus	19.29	29.03
TraesCS4A01G001300.1	Wheat	nucleus	34.64	28.53
TraesCS1A01G399500.1	Wheat	nucleus	25.0	24.14

Protein Annotations

MapMan:15.5.7.1	Gene3D:3.30.730.10	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190	PANTHER:PTHR31190:SF67	SMART:SM00380
SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS4A01G326400	EnsemblPlants:TraesCS4A01G326400.1	TIGR:cd00018	SEG:seg	:

Description

No Description!

Coordinates

chr4A:-:613543523..613544365

Molecular Weight (calculated)

29625.6 Da

IEP (calculated)

7.365

GRAVY (calculated)

-0.356

Length

280 amino acids

Sequence
(BLAST)

001: MSDPSASSTA SSSPTSSSTS PRLTTGVVNF LARRAVTTQQ NHHLPAAEAF PLHSPGSSTG SADSAPWHHR APATPPPVLP FDTSDADEML LLDMLSQHHE
101: VQHAAAAPTT APAKQEADEE GKVALGVGRA FRGVRKRPWG KFAAEIRDST RNGVRVWLGT FDSPEAAALA YDQAAFAIRG GAAVLNFPAD QVRRSLEGAA
201: DDACGRAHGL SPVLALKRRH CMRSRKAAAA GRVAKAATRG ARPECVMELE DLGAEYLEQL LGASEDTASM SSWCWSHQSV

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.