Factsheet for TraesCS2B01G054100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G040300.1	Wheat	nucleus	76.88	75.37
TraesCS2B01G053900.1	Wheat	nucleus	74.37	72.55
TraesCS2B01G054000.1	Wheat	nucleus	77.39	59.23
GSMUA_Achr4P05520_001	Banana	nucleus, plastid	39.7	49.07
GSMUA_AchrUn_...	Banana	nucleus	37.69	46.58
Os07t0410700-01	Rice	nucleus	55.28	46.03
GSMUA_Achr4P12060_001	Banana	nucleus	45.73	44.17
KXG34964	Sorghum	nucleus	55.28	43.65
Zm00001d019475_P001	Maize	nucleus	55.78	42.37
VIT_07s0005g03230.t01	Wine grape	nucleus	44.72	39.91
VIT_07s0005g03260.t01	Wine grape	nucleus	44.22	38.94
VIT_07s0005g03270.t01	Wine grape	nucleus	42.71	38.29
TraesCS2B01G485200.1	Wheat	nucleus	47.74	38.15
TraesCS5B01G308400.1	Wheat	nucleus	39.7	37.8
TraesCS2B01G485400.1	Wheat	nucleus	47.24	37.3
CDY10783	Canola	nucleus	39.7	35.59
CDY09984	Canola	nucleus	40.2	35.09
Bra032433.1-P	Field mustard	nucleus	40.2	35.09
CDY06202	Canola	nucleus	40.2	34.93
VIT_07s0005g03280.t01	Wine grape	nucleus	38.19	34.86
CDY23951	Canola	nucleus	40.7	34.76
CDY72380	Canola	nucleus	40.7	34.76
Bra022832.1-P	Field mustard	nucleus	40.7	34.76
CDY10178	Canola	nucleus	38.69	34.53
AT1G06160.1	Thale cress	nucleus	42.21	34.43
TraesCS5B01G565400.1	Wheat	nucleus	39.2	34.36
CDY47720	Canola	nucleus	33.17	33.5
AT2G31230.1	Thale cress	nucleus	40.7	33.33
TraesCS4B01G312400.1	Wheat	nucleus	40.7	32.93
CDY24746	Canola	nucleus	39.7	32.92
Bra018271.1-P	Field mustard	nucleus	39.7	32.92
TraesCS5B01G565300.1	Wheat	nucleus	40.7	32.79
Bra015478.1-P	Field mustard	nucleus	38.19	32.2
TraesCS4B01G055500.1	Wheat	nucleus	41.71	31.09
TraesCS5B01G539300.1	Wheat	plastid	33.17	30.56
TraesCS1B01G342500.1	Wheat	plastid	41.21	30.48
TraesCS2B01G411500.1	Wheat	plastid	42.71	30.47
Bra021712.1-P	Field mustard	nucleus	40.2	30.19
CDY15417	Canola	nucleus	40.2	29.96
TraesCS3B01G326000.1	Wheat	nucleus	26.13	28.57
TraesCS4B01G002000.1	Wheat	nucleus	47.24	28.48
TraesCS1B01G427600.1	Wheat	nucleus	36.68	25.17
TraesCS1B01G427500.1	Wheat	nucleus	33.67	23.76

Protein Annotations

Gene3D:3.30.730.10	MapMan:35.1	InterPro:AP2/ERF-transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	InterPro:DNA-bd_dom_sf
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471
InterPro:IPR036955	PFAM:PF00847	PIRSF:PIRSF038123	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR31190
PANTHER:PTHR31190:SF34	SMART:SM00380	SUPFAM:SSF54171	EnsemblPlantsGene:TraesCS2B01G054100	EnsemblPlants:TraesCS2B01G054100.1	TIGR:cd00018
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:+:26449236..26449835

Molecular Weight (calculated)

21518.5 Da

IEP (calculated)

9.600

GRAVY (calculated)

-0.331

Length

199 amino acids

Sequence
(BLAST)

001: MEQQHNDHSA MGVATPSCSS STTSSLDSFP FDSSLSSGEM LDAERSPRPK KRALSAAPSY IGVRARPWGR FAAEIRDSTR GGARVWLGTF QTAEAAAMAY
101: DQAALSSRGA ATALNFPLER VQDSLCALGA TATGSCMGGS PVLALKWRHS CRRRRNKAEI LNDAATARVK KKKRFIVELV DLGAEYLDEL LRITCNTAY

Best Arabidopsis Sequence Match ( AT3G23240.1 )
(BLAST)

001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW

Arabidopsis Description

ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.