Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G412200.1 | Wheat | nucleus | 73.77 | 94.24 |
| TraesCS4B01G312400.1 | Wheat | nucleus | 92.21 | 91.46 |
| HORVU4Hr1G079630.1 | Barley | nucleus | 78.69 | 81.7 |
| TraesCS5D01G314400.1 | Wheat | nucleus | 72.95 | 72.36 |
| TraesCS5D01G314900.1 | Wheat | nucleus | 59.43 | 69.38 |
| TraesCS4D01G315000.1 | Wheat | nucleus | 46.31 | 54.33 |
| GSMUA_Achr4P05520_001 | Banana | nucleus, plastid | 30.74 | 46.58 |
| GSMUA_AchrUn_... | Banana | nucleus | 30.33 | 45.96 |
| TraesCS2D01G039800.1 | Wheat | nucleus, plastid | 34.43 | 43.08 |
| GSMUA_Achr4P12060_001 | Banana | nucleus | 35.66 | 42.23 |
| TraesCS7D01G031300.1 | Wheat | nucleus | 45.08 | 41.2 |
| TraesCS2D01G040300.1 | Wheat | nucleus | 33.2 | 39.9 |
| TraesCS2D01G464600.1 | Wheat | nucleus | 40.98 | 39.68 |
| TraesCS2D01G040100.1 | Wheat | nucleus | 31.97 | 38.81 |
| VIT_07s0005g03270.t01 | Wine grape | nucleus | 35.25 | 38.74 |
| VIT_07s0005g03230.t01 | Wine grape | nucleus | 34.84 | 38.12 |
| CDY10178 | Canola | nucleus | 34.43 | 37.67 |
| VIT_07s0005g03260.t01 | Wine grape | nucleus | 34.84 | 37.61 |
| TraesCS2D01G464400.1 | Wheat | nucleus | 40.16 | 37.26 |
| CDY47720 | Canola | nucleus | 29.92 | 37.06 |
| OQU88654 | Sorghum | nucleus | 41.39 | 36.86 |
| TraesCS5D01G549200.1 | Wheat | nucleus | 36.07 | 36.07 |
| TraesCS1D01G331200.1 | Wheat | nucleus | 34.84 | 36.02 |
| Zm00001d019096_P001 | Maize | nucleus | 47.54 | 35.26 |
| CDY09984 | Canola | nucleus | 32.79 | 35.09 |
| Bra015478.1-P | Field mustard | nucleus | 33.61 | 34.75 |
| Bra032433.1-P | Field mustard | nucleus | 32.38 | 34.65 |
| CDY06202 | Canola | nucleus | 32.38 | 34.5 |
| VIT_07s0005g03280.t01 | Wine grape | nucleus | 30.74 | 34.4 |
| CDY10783 | Canola | nucleus | 31.15 | 34.23 |
| TraesCS2D01G040200.1 | Wheat | nucleus | 35.25 | 33.59 |
| EES09974 | Sorghum | nucleus | 43.85 | 33.54 |
| EER98158 | Sorghum | nucleus | 46.72 | 33.53 |
| EER96030 | Sorghum | nucleus | 46.31 | 33.43 |
| TraesCS2D01G391400.1 | Wheat | plastid | 38.11 | 33.33 |
| AT1G06160.1 | Thale cress | nucleus | 33.2 | 33.2 |
| CDY23951 | Canola | nucleus | 31.56 | 33.05 |
| CDY72380 | Canola | nucleus | 31.56 | 33.05 |
| Bra022832.1-P | Field mustard | nucleus | 31.56 | 33.05 |
| CDY24746 | Canola | nucleus | 31.97 | 32.5 |
| Bra018271.1-P | Field mustard | nucleus | 31.97 | 32.5 |
| AT2G31230.1 | Thale cress | nucleus | 31.97 | 32.1 |
| TraesCS1D01G331100.1 | Wheat | plastid | 36.48 | 31.9 |
| Zm00001d019098_P001 | Maize | nucleus | 46.72 | 31.49 |
| Bra021712.1-P | Field mustard | nucleus | 32.79 | 30.19 |
| CDY15417 | Canola | nucleus | 32.79 | 29.96 |
| TraesCS3D01G291100.1 | Wheat | nucleus | 21.31 | 28.73 |
| TraesCS1D01G407000.1 | Wheat | nucleus | 27.87 | 24.37 |
| TraesCS1D01G407100.1 | Wheat | nucleus | 27.05 | 22.76 |
| Os05t0448675-00 | Rice | nucleus | 15.57 | 17.43 |
Protein Annotations
| MapMan:15.5.7.1 | Gene3D:3.30.730.10 | InterPro:AP2/ERF_dom | InterPro:AP2/ERF_dom_sf | InterPro:DNA-bd_dom_sf | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001471 | InterPro:IPR036955 |
| PFAM:PF00847 | PRINTS:PR00367 | PFscan:PS51032 | PANTHER:PTHR31190 | PANTHER:PTHR31190:SF34 | SMART:SM00380 |
| SUPFAM:SSF54171 | EnsemblPlantsGene:TraesCS4D01G310000 | EnsemblPlants:TraesCS4D01G310000.1 | TIGR:cd00018 | SEG:seg | : |
Description
No Description!
Coordinates
chr4D:-:477362905..477363639
Molecular Weight (calculated)
26368.8 Da
IEP (calculated)
6.946
GRAVY (calculated)
-0.339
Length
244 amino acids
Sequence
(BLAST)
(BLAST)
001: MELPTYDGFH CYHGYSISFA SNAHYTHHQP APQAQAHDDT GIDHQLFSFS FPMEATSTSF TTPPAASGAW EEIMTAPVAS PSLLPQGSSS SSRDTPDSPL
101: IGVRKRPWGK YAAEIRDSTR NGARVWLGTF DTPQAAALAY DQAAFSVRGP AAVLNFPVKL VQESLRTLDI GCAAAGDSPA LALKRRHCIR KRRPNKKRMS
201: RATATAAQAT RQEAATTSSL STCVLELEDL GADYLDELLA LSEL
101: IGVRKRPWGK YAAEIRDSTR NGARVWLGTF DTPQAAALAY DQAAFSVRGP AAVLNFPVKL VQESLRTLDI GCAAAGDSPA LALKRRHCIR KRRPNKKRMS
201: RATATAAQAT RQEAATTSSL STCVLELEDL GADYLDELLA LSEL
001: MDPFLIQSPF SGFSPEYSIG SSPDSFSSSS SNNYSLPFNE NDSEEMFLYG LIEQSTQQTY IDSDSQDLPI KSVSSRKSEK SYRGVRRRPW GKFAAEIRDS
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
101: TRNGIRVWLG TFESAEEAAL AYDQAAFSMR GSSAILNFSA ERVQESLSEI KYTYEDGCSP VVALKRKHSM RRRMTNKKTK DSDFDHRSVK LDNVVVFEDL
201: GEQYLEELLG SSENSGTW
Arabidopsis Description
ERF1BEthylene-responsive transcription factor 1B [Source:UniProtKB/Swiss-Prot;Acc:Q8LDC8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.